View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_low_8 (Length: 237)
Name: NF14935_low_8
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 4247204 - 4246999
Alignment:
| Q |
9 |
aaggttgacattcatatttcatatacactctctcatctcagatatccaaatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaa |
108 |
Q |
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| T |
4247204 |
aaggttgacatt-atatttcatatacactctctcatctcagatatccatatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaa |
4247106 |
T |
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| Q |
109 |
aacaaacaaaatacatttctttctcacccatgacaatgacataccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaac |
208 |
Q |
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| T |
4247105 |
aacaaacaaaatacatttctttctcacccat------gacataccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaac |
4247012 |
T |
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| Q |
209 |
tcaagattcaagc |
221 |
Q |
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||||||||||||| |
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| T |
4247011 |
tcaagattcaagc |
4246999 |
T |
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