View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_high_13 (Length: 301)

Name: NF14936_high_13
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_high_13
NF14936_high_13
[»] chr5 (4 HSPs)
chr5 (19-278)||(29272440-29272698)
chr5 (159-271)||(26708113-26708225)
chr5 (159-271)||(26977847-26977959)
chr5 (67-136)||(25636615-25636684)
[»] chr6 (2 HSPs)
chr6 (26-278)||(18812364-18812614)
chr6 (159-271)||(24043206-24043321)
[»] chr3 (3 HSPs)
chr3 (119-271)||(53834911-53835065)
chr3 (19-193)||(14656471-14656645)
chr3 (19-128)||(7138266-7138376)
[»] chr1 (2 HSPs)
chr1 (30-278)||(24188442-24188691)
chr1 (159-271)||(49389161-49389274)
[»] chr4 (4 HSPs)
chr4 (29-278)||(27065963-27066209)
chr4 (29-278)||(27087066-27087312)
chr4 (19-139)||(43290487-43290607)
chr4 (163-248)||(43290371-43290455)
[»] chr7 (1 HSPs)
chr7 (27-248)||(32353933-32354154)
[»] chr2 (1 HSPs)
chr2 (159-271)||(10939677-10939792)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 29272698 - 29272440
Alignment:
Q  19 acaacgcccccacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272698 acaacgcccccacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaa 29272599  T
Q  119 taaatccacacaaatataaatttttcacatcattatattatttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaa--tcactgta 216  Q
    |||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  29272598 taaatccacacaaatataaatttttca---cattgtattatttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatctcactgta 29272502  T
Q  217 tatatctcatgagtttaacgagtgccacaaaatatattcaaatctgcttaaattaattttaa 278  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  29272501 tatatctcatgagtttaacgagtaccacaaaatatattcaggtctgcttaaattaattttaa 29272440  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 26708113 - 26708225
Alignment:
Q  159 tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatgagtttaacgagtgccac-aaaatatattcaa 257  Q
    ||||| ||||||||||||||| | ||||| || || ||||| ||  |||||| |  ||| ||||||||||||||||| |||||||| ||||||||||||     
T  26708113 tttaacacaatggataatccacaatatgtcacaaataattt-aatatgaatctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcag 26708211  T
Q  258 atctgcttaaatta 271  Q
    |||| |||| ||||    
T  26708212 atctacttagatta 26708225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 26977847 - 26977959
Alignment:
Q  159 tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatgagtttaacgagtgccac-aaaatatattcaa 257  Q
    ||||| ||||||||||||||| | ||||| || || ||||| ||  |||||| |  ||| ||||||||||||||||| |||||||| ||||||||||||     
T  26977847 tttaacacaatggataatccacaatatgtcacaaataattt-aatatgaatctcaatatgtatctcatgagtttaacaagtgccacaaaaatatattcag 26977945  T
Q  258 atctgcttaaatta 271  Q
    |||| |||| ||||    
T  26977946 atctacttagatta 26977959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 25636615 - 25636684
Alignment:
Q  67 caggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatccacacaaatata 136  Q
    |||||||||||||| ||| ||  || |||  || || |||||| ||||||||||||||||||||||||||    
T  25636615 caggtctacttaaaatatattttaaatgaaaactcctccacataggggaaaataaatccacacaaatata 25636684  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 18812364 - 18812614
Alignment:
Q  26 ccccacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatcc 125  Q
    |||||||||| |  ||||| ||||||| ||||||||| ||||| |||  ||| | ||||||| ||||| |||||||| ||||||| ||||||||||||||    
T  18812364 ccccacattgagagaatatgaattcatatgtgaatttcattcaagtccgcttgatttatttttcaagtaacgacacctccacattagggaaaataaatcc 18812463  T
Q  126 acacaaatataaatttttcacatcattatattatttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaa--tcactgtatatatct 223  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| |||  | |||||||||||||  ||| |||||||||||    
T  18812464 acacaaatataaatttttcacatcattatattatttaatataatggataa-ccacactatgtcacc-gatattttaaggtgaatctcaatgtatatatct 18812561  T
Q  224 catgagtttaacgagtgccacaaaatatattcaaatctgcttaaattaattttaa 278  Q
    ||||||||  |||||||||||||||||||||||  |||| |||||||||||||||    
T  18812562 catgagtt--acgagtgccacaaaatatattcaggtctgtttaaattaattttaa 18812614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 24043206 - 24043321
Alignment:
Q  159 tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatc--actgtatatatctcatgagtttaacgagtgccacaaaa-tatattc 255  Q
    |||| |||||||||||||||| | |||   |||||| |||||| |||| |||  | | |||||||||| |||||||| | |||||||||||| |||||||    
T  24043206 tttactacaatggataatccacaatattacaccaaatattttacggtgtatcttaatatatatatctcttgagtttagcaagtgccacaaaattatattc 24043305  T
Q  256 aaatctgcttaaatta 271  Q
    | |||| |||| ||||    
T  24043306 agatctacttagatta 24043321  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 53834911 - 53835065
Alignment:
Q  119 taaatccacacaaatataaatttttcacatcattatattatttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaa--tcactgta 216  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||| ||| || |||||||||||||  ||| ||||    
T  53834911 taaatccacacaaatataaatttttcaaatcattgtattatttaatacaatggataatccacaatatgtcacc-aatattttaaggtgaatctcaatgta 53835009  T
Q  217 tatatctcatgagtttaacgagtgccac-aaaatatattcaaatctgcttaaatta 271  Q
    |||||||||| |||||||| |||||||| |||||||||| | ||||||||| ||||    
T  53835010 tatatctcattagtttaacaagtgccacaaaaatatatttagatctgcttagatta 53835065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 14656645 - 14656471
Alignment:
Q  19 acaacgcccccacattgggtaaatataaattcatgtgtgaatttt-attcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaa 117  Q
    |||||||| ||||||||||||||||||||||||| |||| ||||| |||||  ||| ||| ||||||||| |||||||  |||||||||||||| |||||    
T  14656645 acaacgcctccacattgggtaaatataaattcatttgtggatttttattcaaatctgcttgaattatttttcaagtgataacacccccacattgaggaaa 14656546  T
Q  118 ataaatccacacaaatataaatttttcacatcattatatta-tttaatacaatggataatccatagtatgttaccaa 193  Q
    ||||||||||||| |  ||||  |   |||||||||||||| |||||||||||| ||| |||||| ||||| |||||    
T  14656545 ataaatccacacataggtaaa--tcaaacatcattatattattttaatacaatgaatattccataatatgtcaccaa 14656471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 7138266 - 7138376
Alignment:
Q  19 acaacgcccccacattgggtaaatataaattcatgtgt-gaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaa 117  Q
    |||||||| ||||||||| |||||||||| ||||| || || ||||||  | |||| ||| ||||| |||  |||||||||||| ||||||||||| |||    
T  7138266 acaacgccgccacattggataaatataaactcatgcgtagatttttatataagtctgcttgaattagttttaaagtgacgacactcccacattgggaaaa 7138365  T
Q  118 ataaatccaca 128  Q
    |||||||||||    
T  7138366 ataaatccaca 7138376  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 24188691 - 24188442
Alignment:
Q  30 acattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatccacac 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||| ||||| || |||||||| |||||||||||||||||    
T  24188691 acattgggtaaatataaattcatgtgtgaattttattcaagtctgcttgaattatttttcaagtaacgacgccaccacattgaggaaaataaatccacac 24188592  T
Q  130 aaatataaatttttcacatcattatatta-tttaataca--atggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcat 226  Q
    | |  ||||  |   |||| ||||||||| |||||||||  |||||||||| | | ||||| ||| || ||||||||||| |||    ||||||||||||    
T  24188591 ataagtaaa--tcaaacattattatattattttaatacaatatggataatcgacaatatgtaacc-aatattttaaggtgtatctaaatatatatctcat 24188495  T
Q  227 gagtttaacgagtgccac-aaaatatattcaaatctgcttaaattaattttaa 278  Q
    ||||||| | |||||||| ||||||||| ||| ||  |||||||||| |||||    
T  24188494 gagtttatcaagtgccacaaaaatatatacaagtcctcttaaattaactttaa 24188442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 49389161 - 49389274
Alignment:
Q  159 tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatgagtttaacgagtgccacaaaa-tatattcaa 257  Q
    ||||||||||||||||||||| | |||   |||||| |||||| |||| |||    |||||||||| |||||||| | |||||||||||| |||||||||    
T  49389161 tttaatacaatggataatccacaatattacaccaaatattttacggtgtatcttaatatatatctcttgagtttagcaagtgccacaaaattatattcaa 49389260  T
Q  258 atctgcttaaatta 271  Q
     ||| |||| ||||    
T  49389261 gtctacttagatta 49389274  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 27066209 - 27065963
Alignment:
Q  29 cacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatccaca 128  Q
    ||||| ||||| |||||||||||||||| ||||||||||| |||| ||| ||||||||| ||||||| |||||||  ||||||| ||||||| |||||||    
T  27066209 cacatagggtatatataaattcatgtgtaaattttattcaagtctgcttgaattatttttcaagtgatgacacccttacattggagaaaatatatccaca 27066110  T
Q  129 caaatataaatttttcacatcattatatta-tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatg 227  Q
    || ||| |    |   |||| |||  |||| |||||||||||||||||||||||  ||  |||| || |||||| |||| ||| |  ||||||||||||     
T  27066109 cagataaa----tcaaacataattgcattattttaatacaatggataatccataagattatacc-aatattttacggtgtatctcaatatatatctcata 27066015  T
Q  228 agtttaacgagtgccacaa-aatatattcaaatctgcttaaattaattttaa 278  Q
    |||||| | |||| ||||| ||||| ||||| ||| ||||||||||||||||    
T  27066014 agtttagcaagtgacacaacaatatgttcaagtctacttaaattaattttaa 27065963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 27087312 - 27087066
Alignment:
Q  29 cacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatccaca 128  Q
    ||||| ||||| |||||||||||||||| ||||||||||| |||| ||| ||||||||| ||||||| |||||||  ||||||| ||||||| |||||||    
T  27087312 cacatagggtatatataaattcatgtgtaaattttattcaagtctgcttgaattatttttcaagtgatgacacccttacattggagaaaatatatccaca 27087213  T
Q  129 caaatataaatttttcacatcattatatta-tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatg 227  Q
    || ||| |    |   |||| |||  |||| |||||||||||||||||||||||  ||  |||| || |||||| |||| ||| |  ||||||||||||     
T  27087212 cagataaa----tcaaacataattgcattattttaatacaatggataatccataagattatacc-aatattttacggtgtatctcaatatatatctcata 27087118  T
Q  228 agtttaacgagtgccacaa-aatatattcaaatctgcttaaattaattttaa 278  Q
    |||||| | |||| ||||| ||||| ||||| ||| ||||||||||||||||    
T  27087117 agtttagcaagtgacacaacaatatgttcaagtctacttaaattaattttaa 27087066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 43290607 - 43290487
Alignment:
Q  19 acaacgcccccacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaa 118  Q
    |||||| ||||| ||| ||||||||||||| ||||||| ||||||||| | |||| ||  ||||||||| |||||||   ||||||||||||||||||||    
T  43290607 acaacgaccccatattaggtaaatataaatccatgtgtaaattttatttaagtctgctagaattatttttcaagtgatatcacccccacattggggaaaa 43290508  T
Q  119 taaatccacacaaatataaat 139  Q
    ||||| |||||| | ||||||    
T  43290507 taaattcacacatagataaat 43290487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 43290455 - 43290371
Alignment:
Q  163 atacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatctcatgagtttaacgagtgccacaaaa 248  Q
    |||||||||||||| || | ||||| ||||| | |||||||||| ||| |  ||||||||||||||||||| | ||| ||||||||    
T  43290455 atacaatggataattcacaatatgtcaccaata-ttttaaggtgtatctcaatatatatctcatgagtttatcaagtaccacaaaa 43290371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 32353933 - 32354154
Alignment:
Q  27 cccacattgggtaaatataaattcatgtgtgaattttattcaggtctacttaaattattttgcaagtgacgacacccccacattggggaaaataaatcca 126  Q
    |||| ||||||||||||||||| ||||||| ||||||||| | |||| ||  ||||||||| |||||||   |||||||||||||||||||||||||  |    
T  32353933 cccatattgggtaaatataaatccatgtgtaaattttatttaagtctgctagaattatttttcaagtgatatcacccccacattggggaaaataaattta 32354032  T
Q  127 cacaaatataaatttttcacatcattatattattt---aatacaatggataatccatagtatgttaccaaaaattttaaggtgaatcactgtatatatct 223  Q
    |||| | |||||  |   ||||||||  |||||||    ||||||||||||||||| | ||||| ||| || ||||||||||| ||| |  |||||||||    
T  32354033 cacatagataaa--tcaaacatcattgcattattttaatatacaatggataatccacaatatgtcacc-aatattttaaggtgtatctcaatatatatct 32354129  T
Q  224 catgagtttaacgagtgccacaaaa 248  Q
    |||||||||| | ||| ||||||||    
T  32354130 catgagtttatcaagtaccacaaaa 32354154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 10939677 - 10939792
Alignment:
Q  159 tttaatacaatggataatccatagtatgttaccaaaaattttaaggtgaatc--actgtatatatctcatgagtttaacgagtgccacaaaa-tatattc 255  Q
    |||| |||||||||||||||| | |||   |||||| |||||| |||| |||  | | |||||||||| |||||||| | |||||||||||| |||||||    
T  10939677 tttactacaatggataatccacaatattacaccaaatattttacggtgtatcttaatatatatatctcttgagtttagcaagtgccacaaaattatattc 10939776  T
Q  256 aaatctgcttaaatta 271  Q
    | |||| |||| ||||    
T  10939777 agatctacttagatta 10939792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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