View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_high_15 (Length: 299)

Name: NF14936_high_15
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_high_15
NF14936_high_15
[»] chr3 (5 HSPs)
chr3 (17-142)||(49192684-49192809)
chr3 (176-280)||(49192845-49192949)
chr3 (18-111)||(49203786-49203879)
chr3 (20-131)||(49213804-49213914)
chr3 (18-105)||(49188949-49189036)
[»] chr8 (1 HSPs)
chr8 (20-135)||(26757329-26757444)
[»] chr1 (4 HSPs)
chr1 (20-135)||(31528069-31528184)
chr1 (18-105)||(37031460-37031547)
chr1 (20-135)||(51825472-51825588)
chr1 (20-135)||(32591746-32591862)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 49192684 - 49192809
Alignment:
Q  17 taggattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgt 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49192684 taggattgaccgggtagaatccatgctttctttgcgagctttatgtctttgattccgattccggttatcacaaggtattgtgatgcttttgctaccttgt 49192783  T
Q  117 acattgttgattttgatttaattttt 142  Q
    |||| |||||||||||||||||||||    
T  49192784 acatcgttgattttgatttaattttt 49192809  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 49192845 - 49192949
Alignment:
Q  176 ttactgaagtcactgtgttcttgcttatggtgtaaggtgtatgatatggaaggctttatatagatatatgataaaggaagacaatgcatgatagcaaaat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49192845 ttactgaagtcactgtgttcttgcttatggtgtaaggtgtatggtatggaaggctttatatagatatatgataaaggaagagaatgcatgatagcaaaat 49192944  T
Q  276 aatta 280  Q
    |||||    
T  49192945 aatta 49192949  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 49203786 - 49203879
Alignment:
Q  18 aggattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctac 111  Q
    |||| |||||||| | |||||||||||||||||| |||||||||||||||||    || || |||||||||||||||| |||||| ||||||||    
T  49203786 aggactgaccgggaataatccatgctttctttgcaagttttatgtctttgatgagaatacctgttatcacaaggtattctgatgcctttgctac 49203879  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 49213804 - 49213914
Alignment:
Q  20 gattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgtaca 119  Q
    ||||||||||| | ||||||||||||||||  |||||||||||| | |||||||   ||||||||  |||| |||| ||||||||||||||||  |||||    
T  49213804 gattgaccggggaaaatccatgctttcttttggagttttatgtcgtcgattccggcaccagttatagcaagatattctgatgcttttgctacccggtaca 49213903  T
Q  120 ttgttgattttg 131  Q
     |||||||||||    
T  49213904 -tgttgattttg 49213914  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 49188949 - 49189036
Alignment:
Q  18 aggattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttt 105  Q
    ||||||||||||| | ||||||||||||||||  |||||| |||||||||||    || || |||||||||||||||| |||||||||    
T  49188949 aggattgaccgggaaaaatccatgctttctttttgagtttgatgtctttgatgaaaatacctgttatcacaaggtattctgatgcttt 49189036  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 26757329 - 26757444
Alignment:
Q  20 gattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgtaca 119  Q
    |||| |||||| |||||||||||||| ||| ||||||| ||||||||||| |    ||| |||||||||||||||| |||||||||||| ||||| ||||    
T  26757329 gatttaccgggaagaatccatgctttgtttacgagtttgatgtctttgatccatgctccggttatcacaaggtattctgatgcttttgcgaccttataca 26757428  T
Q  120 ttgttgattttgattt 135  Q
    || |||| ||||||||    
T  26757429 ttcttgaatttgattt 26757444  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 31528069 - 31528184
Alignment:
Q  20 gattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgtaca 119  Q
    |||||||| || | |||||||| ||||||||| ||||| ||||||| |||||||  ||| |||||||| || || |  ||||||||||||||| ||||||    
T  31528069 gattgaccagggaaaatccatgatttctttgcaagtttgatgtcttcgattccggctccggttatcaccagatactcggatgcttttgctaccctgtaca 31528168  T
Q  120 ttgttgattttgattt 135  Q
    ||||||||||||||||    
T  31528169 ttgttgattttgattt 31528184  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 37031460 - 37031547
Alignment:
Q  18 aggattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttt 105  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||||||||    || || |||||||||||||||| |||||||||    
T  37031460 aggattgaccgggaagaatccatgctttctttgcaagtttgatgtctttgatcagaatacctgttatcacaaggtattctgatgcttt 37031547  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 51825472 - 51825588
Alignment:
Q  20 gattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgtaca 119  Q
    |||||||| || | |||||||| ||||||||| ||||| ||||||| |||||||  ||| |||| ||| ||||| |  ||||||||||||||| ||||||    
T  51825472 gattgaccagggaaaatccatgatttctttgcaagtttgatgtcttcgattccggctccggttaacaccaggtactcggatgcttttgctaccctgtaca 51825571  T
Q  120 ttgtt-gattttgattt 135  Q
    ||||| |||||||||||    
T  51825572 ttgttggattttgattt 51825588  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 32591862 - 32591746
Alignment:
Q  20 gattgaccgggtagaatccatgctttctttgcgagttttatgtctttgattccgattccagttatcacaaggtattgtgatgcttttgctaccttgtaca 119  Q
    |||||||| || | || ||||| ||||||||| ||||| ||||||| ||||||   ||| |||||||| ||||| |  ||||||||||||||| ||||||    
T  32591862 gattgaccagggaaaacccatgatttctttgcaagtttgatgtcttcgattccagctccggttatcaccaggtactcggatgcttttgctaccctgtaca 32591763  T
Q  120 -ttgttgattttgattt 135  Q
     || |||||||||||||    
T  32591762 ttttttgattttgattt 32591746  T

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