View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14936_high_18 (Length: 260)
Name: NF14936_high_18
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_high_18 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 6821988 - 6822237
Alignment:
| Q |
9 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaacactttgtcttgttggcatacaatgtagacttttgcaacagttccatagttgttttgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6821988 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaacactttgtcttgttggcatacaatgtagacttttgcaacagttccatagttgttttgt |
6822087 |
T |
|
| Q |
109 |
gtgacacttgttttctctcctaatagttcttgatcagcaaagctacgaacaggtcttattaatgacattacaagggacaagtcctggttcatatataagc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6822088 |
gtgacacttgttttctctcctaatagttcttgatcagcaaagctacgaacaggtcttattaatgacattgcaagggacaagtcctggtttatatataagc |
6822187 |
T |
|
| Q |
209 |
atttcnnnnnnnnntataagaatcgtagttattttccaaagaatttaaaagt |
260 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6822188 |
atttc--aaaaaaatataagtatcgtatttattttccaaagaatttaaaagt |
6822237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 6799960 - 6800160
Alignment:
| Q |
9 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaacactttgtcttgttggcatacaatgtagacttttgcaacagttccatagttgttttgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||| | || | |
|
|
| T |
6799960 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaatactttgtcttgttggcacacaatgaagactttggcaacagttccatagttatctttt |
6800059 |
T |
|
| Q |
109 |
gtgacacttgttttctctcctaatagttcttgatcagcaaagctacgaacaggtcttattaatgacattacaagggacaagtcctggttcatatataagc |
208 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||| || |||| | | |||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6800060 |
gtgactcttgttttctcttgtaatagttcttcatcaccatagctcctagcaggccttattaatgacattgcaagggacaagtcctggttcatatataagc |
6800159 |
T |
|
| Q |
209 |
a |
209 |
Q |
| |
|
| |
|
|
| T |
6800160 |
a |
6800160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 6811055 - 6811259
Alignment:
| Q |
9 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaacactttgtcttgttggcatacaatgtagacttttgcaacagttccatagttgttttgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||| | || | |
|
|
| T |
6811055 |
agggtttcgttcaatcattgatagctgaaaatcatgctctaacactttgtcttgttggcacacaatgaagactttggcaacagttccatggttatctttt |
6811154 |
T |
|
| Q |
109 |
gtgacacttgttttctctcctaatagttcttgatcagcaaagctacgaacaggtcttattaatgacattacaagggacaagtcctggttcatatataagc |
208 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| || |||| | | | || |||| |||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6811155 |
gtgacttttgttttctcttgtaatagttcttcatcaccatagctcctagctggccttagtaatgacaatgcaagggacaagtcctggttcatatataagc |
6811254 |
T |
|
| Q |
209 |
atttc |
213 |
Q |
| |
|
||||| |
|
|
| T |
6811255 |
atttc |
6811259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University