View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_high_2 (Length: 516)
Name: NF14936_high_2
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 1325654 - 1325155
Alignment:
| Q |
1 |
tgtaccactgagaagaacaaggtctttttctgtgagacccttgtttaggaacttggtcttgagttgctgaattgaatcattaacatccggcatattacct |
100 |
Q |
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| T |
1325654 |
tgtaccactgagaagaacaaggtctttttctgtgagacccttgtttaggaacttggtcttgagttgctgaattgaatcattaacatccggcatattacct |
1325555 |
T |
|
| Q |
101 |
gcaagagatttatctgaaacaaatccatctctcctccctgttggaacttgatatgcaggtccatttgcctacatgtaacagttaatgcagaagcattaaa |
200 |
Q |
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| T |
1325554 |
gcaagagatttatctgaaacaaatccatctctcctccctgttggaacttgatatgcaggtccatttgcctacatgtaacagttaatggagaagcattaaa |
1325455 |
T |
|
| Q |
201 |
cttcttgaagaagnnnnnnngctttgtggacaatactagagaatgaaatataatagagtaagttaggaattaggaccatgacaattgcatctcttgctgc |
300 |
Q |
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| T |
1325454 |
cttcttgaagaagaaaaaaagctttgtggacaatactagagaatgaaatataatagagtaagttaggaattaggaccatgacaattgcatctctagctgc |
1325355 |
T |
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| Q |
301 |
caatgcaacaatatctgcacaagaaaccactcctggacaggatgcttctaattgtgccttggctctttctatcacttcaaatcctttaacacctgcatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325354 |
caatgcaacaatatctgcacaagaaaccactcctggacaggatgcttctaattgtgccttggctctttctatcacttcaaatcctttaacacctgcatgt |
1325255 |
T |
|
| Q |
401 |
ggatctgcattcttctctggattttgagtagtattaatcagtattgaaccatcacatccctgaaaaactccatcaaaatcatgtcacaaaatgttagaac |
500 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325254 |
ggaaatgcagtcttctctggattttgagtagtattaatcagtattgaaccatcacatccctgaaaaactccatcaaaatcatgtcacaaaatgttagaac |
1325155 |
T |
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