View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_high_7 (Length: 395)
Name: NF14936_high_7
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 10595110 - 10594730
Alignment:
| Q |
1 |
tcatctcctccaattcaaacaatatgaagcaaacacatctgaggatcttttttattacataggcaaaacaatttggtaatttctctagagcttctcacta |
100 |
Q |
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| T |
10595110 |
tcatttcctccaattcaaacaatatgaagcaaacacatctgaggatcttttttattacataggcaaaacaatttggtaatatctctagagcttctcacta |
10595011 |
T |
|
| Q |
101 |
ttatactacatcaaaatttacaaaattcaacacattcctggttcacaaagttgtactgctattatacagggaatttaacatacacaaacctttcctatat |
200 |
Q |
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| T |
10595010 |
ttatactacatcaaaattt-caaaattcaacacattcctggttcacaaagttgtactgctattatacagggaatttaacatacaaaaacctttcctatat |
10594912 |
T |
|
| Q |
201 |
tttattatctatactatacacgatataacatagccaaggaaaagcatgacttacattaacaaaacaggtacacaaaaatccagccaaaggtccttccaca |
300 |
Q |
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| T |
10594911 |
tctattatctatactatacacgatataacatagccaaggaaaagcatgacttacattaacaaaacaggtacacaaaaatccagccaaagatcctaccaca |
10594812 |
T |
|
| Q |
301 |
caatccaaaagaaaatttatcgatgcaaaatcaaaccaccaacccaagaagagataaaataaaagtgtacttgtgtgcttta |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
10594811 |
caatccaaaagaaaatttatcgatgcaaaatcaaaccaccaacccaagaagagattaaataaaagtgtagttgtgtgcttta |
10594730 |
T |
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