View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_1 (Length: 553)
Name: NF14936_low_1
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 9444602 - 9444064
Alignment:
| Q |
1 |
aggatgtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttgatccaggcatgaagt |
100 |
Q |
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| T |
9444602 |
aggatgtgagagtaacaagcttaacacggcattgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttcatccaggcatgaagt |
9444503 |
T |
|
| Q |
101 |
tgtatccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaataaacaaac |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9444502 |
tgtatccgtataatatttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaataatcaaac |
9444403 |
T |
|
| Q |
201 |
gtggaattcgatcgacggaagctgtatttgtatgaattagtatctttttgggtaaaattgttgctgtataagaagaagtgagggagagaggagcaattgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
9444402 |
gtggaattcgatcgacggaagctgtatttgtatgaattagtatctttttgggtaaaattgtttctgtataagaagaagtgagggagagaggagcagttgg |
9444303 |
T |
|
| Q |
301 |
taggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgtt |
400 |
Q |
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| T |
9444302 |
taggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattgattgcaccaaatattcagcatcatacagcttcaatactgtaacgtt |
9444203 |
T |
|
| Q |
401 |
gtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaa |
500 |
Q |
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| T |
9444202 |
gtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggataagttatgttggaaatttttccacaggaagaa |
9444103 |
T |
|
| Q |
501 |
gaacaaggttgtgaataagttttgtgtggaagtagaaac |
539 |
Q |
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| T |
9444102 |
gaacaaggttgtgaataagttttgtgtggaagtagaaac |
9444064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 255 - 539
Target Start/End: Complemental strand, 9424115 - 9423831
Alignment:
| Q |
255 |
aaattgttgctgtataagaagaagtgagggagagaggagcaattggtaggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattg |
354 |
Q |
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|||||| ||| ||||||||||||| |||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
9424115 |
aaattggtgcggtataagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattattgtaattgattg |
9424016 |
T |
|
| Q |
355 |
attgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
454 |
Q |
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| T |
9424015 |
attgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttacgcaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
9423916 |
T |
|
| Q |
455 |
tagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
539 |
Q |
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| T |
9423915 |
tagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
9423831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 255 - 455
Target Start/End: Original strand, 9417905 - 9418105
Alignment:
| Q |
255 |
aaattgttgctgtataagaagaagtgagggagagaggagcaattggtaggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattg |
354 |
Q |
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|||||| ||| ||||| ||||||| |||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
9417905 |
aaattggtgcggtatatgaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattcttgtaattgattg |
9418004 |
T |
|
| Q |
355 |
attgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
454 |
Q |
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| T |
9418005 |
attgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
9418104 |
T |
|
| Q |
455 |
t |
455 |
Q |
| |
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| |
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| T |
9418105 |
t |
9418105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 9417627 - 9417804
Alignment:
| Q |
1 |
aggatgtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgtgttgatccaggcatgaagt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
9417627 |
aggatgtgagagtaacaagctcaacacggcattgaggctgcaatattccaaagtgtggatccccaacaataacatatgtttgttgatccaggcatgaagc |
9417726 |
T |
|
| Q |
101 |
tgtatccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatc |
178 |
Q |
| |
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|||||||| ||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9417727 |
tgtatccgcataatacatattcacatcattactaggtggacttgtacacttcaggtaaattacaggccaagataaatc |
9417804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9424393 - 9424203
Alignment:
| Q |
1 |
aggatgtgagagtaacaagcttaacacggcaatgaggctgcaatattccaagttgtgggtccccgacaataacatatgtgt---gttgatccaggcatga |
97 |
Q |
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|||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||||| ||| ||| || |
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| T |
9424393 |
aggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgcaaga |
9424294 |
T |
|
| Q |
98 |
agttgtatccgtataatacttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcg |
188 |
Q |
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| T |
9424293 |
agatgtatccgtataatacatattcacattgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcg |
9424203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 9418102 - 9418157
Alignment:
| Q |
484 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
539 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
9418157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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