View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_low_11 (Length: 314)

Name: NF14936_low_11
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_low_11
NF14936_low_11
[»] chr4 (5 HSPs)
chr4 (7-308)||(31476670-31476951)
chr4 (9-307)||(31496612-31496903)
chr4 (22-308)||(31501791-31502073)
chr4 (239-308)||(31161733-31161802)
chr4 (239-310)||(31150437-31150508)
[»] chr6 (8 HSPs)
chr6 (149-304)||(33402721-33402873)
chr6 (220-304)||(33642491-33642575)
chr6 (222-304)||(33059670-33059752)
chr6 (149-296)||(31566949-31567093)
chr6 (169-304)||(33390179-33390311)
chr6 (231-303)||(33306594-33306666)
chr6 (219-296)||(9168889-9168966)
chr6 (219-296)||(31560697-31560774)
[»] chr2 (1 HSPs)
chr2 (149-304)||(17438649-17438801)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 31476670 - 31476951
Alignment:
Q  7 aaatatatatttgaattcacttttcctttttatactatagttcttgtaaagaagaaaaacagatgttattttgtttagtgagagtcccttttgtttttgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||                    ||||||||    
T  31476670 aaatatatatttgaattcacttttcctttttatactatagttctcgtaaagaagaaaaacatatgttatttt--------------------gtttttgt 31476749  T
Q  107 ttcctaatgtgatgattcatgtaaatggtcaacttctttaatctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactatttt 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31476750 ttcctaatgtgatgattcatgtcaatggtcaacttctttaatctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactatttt 31476849  T
Q  207 ggacagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31476850 ggacagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgat 31476949  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 31496612 - 31496903
Alignment:
Q  9 atatatatttgaattcacttttcctttttatactatagttcttgtaaagaagaaaaacagatgttattttgtttagtgagagtcccttttgtttttgttt 108  Q
    |||||| ||||||||||||||| ||||||||| ||||||| | |||| ||||||||||   | ||||||||||| ||| |||| | ||||||||||||||    
T  31496612 atatatttttgaattcacttttactttttatattatagttttcgtaaggaagaaaaacctctattattttgtttcgtgcgagtgctttttgtttttgttt 31496711  T
Q  109 cctaatgtgatgattcatgtaaatggtcaacttctttaatctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactattttgg 208  Q
        ||| ||| |||  ||| |||||||||||||||| ||||||||||||||||||||  ||||||||||| || |||||| |||||||   ||||||||    
T  31496712 ----atgagattatttgtgtcaatggtcaacttctttcatctttcaggcgacaatctccggagattaaaaaaattgttcaaaggataatggatattttgg 31496807  T
Q  209 acagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatg 307  Q
    |  ||||||   ||  | ||| |||||| ||||||||||||||||| |||| ||  ||| |||||||||||||||||||||||||||| ||| ||||||    
T  31496808 attgcaaat---ctatatgtgtttcaaatgatttagttgggatggactctcatatgcaaaaattagaaaagcttttacttttggactcggttaatgatg 31496903  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 31501791 - 31502073
Alignment:
Q  22 ttcacttttcctttttatactatagttcttgtaaagaagaaaaacagatgttattttgtttagtgagagtcccttttgtttttgtttcctaatgtgatga 121  Q
    ||||||||||||||||||||||||||| | |||||||||||||||   ||||||||||||| |||    | | |||| |||||||||| | || ||| ||    
T  31501791 ttcacttttcctttttatactatagttttcgtaaagaagaaaaactt-tgttattttgtttggtgcacatgctttttatttttgtttctttatatgacga 31501889  T
Q  122 ttcatgtaaatggtcaacttctttaatctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactattttggacagcaaattatc 221  Q
     |  ||| | ||||||||||||||||||||||||||||||||||| ||  |||||||| || || ||| ||||||||| |||||||||  ||||    ||    
T  31501890 gttgtgttattggtcaacttctttaatctttcaggcgacaatctccaggaattaaaaatatcgtccaaaggataataaatattttggattgcaa---ctc 31501986  T
Q  222 ttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt 308  Q
     ||| ||| |||||| ||  ||||||| || | ||||| || ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  31501987 atcatgtgtttcaaaagacatagttggaattgtttctcatatacaagcattagaaaaacttttactcttggactctgttgatgatgt 31502073  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 31161802 - 31161733
Alignment:
Q  239 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt 308  Q
    |||||| |||||||||||||| || | ||||||||||||| | |||||||||||| || |||||||||||    
T  31161802 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgt 31161733  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 31150508 - 31150437
Alignment:
Q  239 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgtcc 310  Q
    ||||||| |||||| ||||||||  ||| ||||||||||| | |||||||||||||||  ||||||||||||    
T  31150508 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc 31150437  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 304
Target Start/End: Complemental strand, 33402873 - 33402721
Alignment:
Q  149 ctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgg 248  Q
    ||||||||| |||| ||  ||||||||||||||| ||||||  |||||| | ||| |||||  ||||||   ||||| ||| |||||| |||||||||||    
T  33402873 ctttcaggccacaagctggagagattaaaaagattgttcaaaagataatgaatatattggagtgcaaat---cttcatgtgtttcaaaagatttagttgg 33402777  T
Q  249 gatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatg 304  Q
    ||| |||||||||| | ||| |||| |||| | |||  |||||||||  |||||||    
T  33402776 gattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatg 33402721  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 33642491 - 33642575
Alignment:
Q  220 tcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatg 304  Q
    |||| ||||| |||||| |||||||||||||| |||||||||| | ||| |||| |||| | ||| ||||||||||| |||||||    
T  33642491 tctttaagtgtttcaaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatg 33642575  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 33059752 - 33059670
Alignment:
Q  222 ttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatg 304  Q
    |||| ||| |||||| |||||||||||||| |||||||||| ||||| |||| |||| | ||| |||||| |||| |||||||    
T  33059752 ttcatgtgtttcaaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatg 33059670  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 31566949 - 31567093
Alignment:
Q  149 ctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgg 248  Q
    ||||||||| |||||||  ||||||||||||||| | ||||   ||||| | ||| |||||  ||||||   ||||| ||| |||||| |||||||||||    
T  31566949 ctttcaggccacaatcttgagagattaaaaagattgctcaaacaataatgaatatattggagtgcaaat---cttcatgtgtttcaaaagatttagttgg 31567045  T
Q  249 gatggattctcctagacaagaattagaaaagcttttacttttggactc 296  Q
    ||| |||||||||| | |||  ||| |||| | ||| |||||||||||    
T  31567046 gattgattctcctatagaagcgttacaaaatcatttgcttttggactc 31567093  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 304
Target Start/End: Complemental strand, 33390311 - 33390179
Alignment:
Q  169 gagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaag 268  Q
    |||||||||||||| |||||| ||||||| | ||| |||||  ||||    |||||| ||| ||| || |||||||| ||||| |||||||||| | |||    
T  33390311 gagattaaaaagattgttcaaaggataatgaatatattggagtgcaa---ttcttcatgtgtttcgaaagatttagtagggattgattctcctatagaag 33390215  T
Q  269 aattagaaaagcttttacttttggactctgttgatg 304  Q
     |||| |||| | ||| ||||||||||| |||||||    
T  33390214 cattacaaaatcatttgcttttggactcagttgatg 33390179  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 33306666 - 33306594
Alignment:
Q  231 ttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgat 303  Q
    |||||| |||||||||||||| |||||||||| | ||| |||| |||| | ||| ||||||||||| ||||||    
T  33306666 ttcaaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgat 33306594  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 9168966 - 9168889
Alignment:
Q  219 atcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactc 296  Q
    ||||||| ||| |||||| ||||||||||||||  ||||||||| | ||| |||| |||| | ||| |||||||||||    
T  9168966 atcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactc 9168889  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 31560697 - 31560774
Alignment:
Q  219 atcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactc 296  Q
    ||||||| ||| |||||| ||||||||||||||  ||||||||| | ||| |||| |||| | ||| |||||||||||    
T  31560697 atcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactc 31560774  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 304
Target Start/End: Original strand, 17438649 - 17438801
Alignment:
Q  149 ctttcaggcgacaatctctagagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgg 248  Q
    ||||||||| ||||| |  ||||||||||||||| ||||||  |||||| | ||| |||||  ||||||   ||||| ||  |||||| |||||||||||    
T  17438649 ctttcaggccacaatgtgcagagattaaaaagattgttcaaaagataatgaatatattggaatgcaaat---cttcatgtaattcaaaagatttagttgg 17438745  T
Q  249 gatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatg 304  Q
    |||  |||||| || | ||| |||| |||| | ||||||||||||||| |||||||    
T  17438746 gataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatg 17438801  T

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