View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_12 (Length: 306)
Name: NF14936_low_12
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_12 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 4487984 - 4487695
Alignment:
| Q |
1 |
tgcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487984 |
tgcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgat |
4487885 |
T |
|
| Q |
101 |
attaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaagttttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4487884 |
attaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaaattttctg |
4487785 |
T |
|
| Q |
201 |
atgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
289 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487784 |
atgcattaaaatatgatagcaatttttttgtttttaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
4487695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 289
Target Start/End: Complemental strand, 19023584 - 19023296
Alignment:
| Q |
2 |
gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgata |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
19023584 |
gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccactgagtgaaggtcagactattcgcaaacgttggtttctaagtgtgtgata |
19023485 |
T |
|
| Q |
102 |
ttaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaagttttctga |
201 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| |||||||| |
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| T |
19023484 |
ttaaatcatgatagcgatttttgatgaagaacataaaatctgattggtaggcatgttttctttttcagatcggaaatcttatttccttcaaattttctga |
19023385 |
T |
|
| Q |
202 |
tgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
289 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
19023384 |
tgcattaaaatatgatagcaatttttctgtttctaaatgtatgatatctttttcaggttatgaaagtgaagttaatttaggaggaggtt |
19023296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 22067458 - 22067195
Alignment:
| Q |
27 |
agcttttgttgtaagttaaaccccgctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgatattaaaacatgatagcgatttttgat |
126 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22067458 |
agcttttgttgtaagttaaaccccactgagtgaaggtcagactatacgcaaatgttggtttctaagtgtatgatattaaaacatgatagcgatttttgat |
22067359 |
T |
|
| Q |
127 |
gaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaagttttctgatgcattaaaatatgatagcaannnn |
226 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22067358 |
gaagaacataaaatctgattggtaggcatgttttctttttcagatcggaaatcttatttccttcaaattttctgatgcattaaaatatgatagcaattat |
22067259 |
T |
|
| Q |
227 |
nnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
289 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22067258 |
tctgtttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
22067195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 289
Target Start/End: Complemental strand, 22621794 - 22621499
Alignment:
| Q |
2 |
gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccg-ctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
22621794 |
gcagttataattgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtttctaaatgtatgat |
22621695 |
T |
|
| Q |
101 |
attaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcata------ttttctttctcagatcgaaaatcgtatttccttcaagt |
194 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||| |||| ||| ||||||| ||||| ||||||||||| | |
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| T |
22621694 |
attaaaacatgatagcgaattttgatgaagaacataaaatttgattagcaggcatagtttttttttttttttcagatctgaaatcttatttccttcatat |
22621595 |
T |
|
| Q |
195 |
tttctgatgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
289 |
Q |
| |
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|| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621594 |
ttcctgatgcattaaaatatgatagcgatttttctatttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggtt |
22621499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 13246 - 13286
Alignment:
| Q |
120 |
ttttgatgaagaacataaaatctgattggtaggcatatttt |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13246 |
ttttgatgaagaacataaaatctgattggtaggcatatttt |
13286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 43255134 - 43255101
Alignment:
| Q |
253 |
tcaggtcatgaaagtgaagttaatttaggaggag |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43255134 |
tcaggtcatgaaagtgaagttaatttaggaggag |
43255101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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