View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_low_15 (Length: 300)

Name: NF14936_low_15
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_low_15
NF14936_low_15
[»] chr1 (7 HSPs)
chr1 (1-143)||(26826655-26826797)
chr1 (225-281)||(26826592-26826648)
chr1 (128-202)||(46545098-46545172)
chr1 (128-207)||(6165519-6165598)
chr1 (128-183)||(13120217-13120272)
chr1 (128-202)||(2620000-2620074)
chr1 (129-182)||(19025097-19025150)
[»] chr5 (2 HSPs)
chr5 (128-203)||(19288067-19288142)
chr5 (146-186)||(17528472-17528512)
[»] chr4 (8 HSPs)
chr4 (128-202)||(29515279-29515353)
chr4 (128-184)||(52627383-52627439)
chr4 (128-182)||(11907440-11907494)
chr4 (155-202)||(4889931-4889978)
chr4 (128-207)||(4986328-4986407)
chr4 (153-202)||(1937841-1937890)
chr4 (130-203)||(18196270-18196343)
chr4 (153-202)||(26095330-26095379)
[»] chr2 (2 HSPs)
chr2 (128-203)||(37440437-37440512)
chr2 (128-205)||(9612439-9612516)
[»] chr7 (3 HSPs)
chr7 (137-202)||(21688779-21688844)
chr7 (128-203)||(15964179-15964254)
chr7 (128-170)||(21496788-21496830)
[»] chr6 (5 HSPs)
chr6 (128-185)||(21279684-21279741)
chr6 (128-202)||(31895013-31895087)
chr6 (128-202)||(31393303-31393377)
chr6 (128-170)||(31202378-31202420)
chr6 (128-182)||(32089857-32089911)
[»] chr3 (3 HSPs)
chr3 (135-207)||(35092197-35092269)
chr3 (128-202)||(41073339-41073413)
chr3 (128-182)||(4666411-4666465)
[»] scaffold0259 (1 HSPs)
scaffold0259 (128-202)||(7181-7255)
[»] scaffold0169 (1 HSPs)
scaffold0169 (128-202)||(27480-27554)
[»] chr8 (3 HSPs)
chr8 (128-202)||(18887693-18887767)
chr8 (128-172)||(6731782-6731826)
chr8 (132-182)||(22014021-22014071)
[»] scaffold0002 (1 HSPs)
scaffold0002 (130-203)||(284703-284776)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26826797 - 26826655
Alignment:
Q  1 ttaaatatctataaactcaaattttctttcttaacttgaaccaaattaatacagccacagtaacaagaattctaagagaattatttacactagtacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26826797 ttaaatatctataaactcaaattttctttcttaacttgaaccaaattaatacagccacagtaacaagaattctaagagaattatttacactagtacaaaa 26826698  T
Q  101 aacactttttagtaatagtgctgcttaagtaattactgagggt 143  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  26826697 aacactttttagtaatagtgctgcttaagtaattattgagggt 26826655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 26826648 - 26826592
Alignment:
Q  225 gatcttgctcaacatgcaatatgaaaatccaccatcgcgtctactcgacaccaacgc 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26826648 gatcttgctcaacatgcaatatgaaaatccaccatcgcgtctactcgacaccgacgc 26826592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 46545172 - 46545098
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    ||||| ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  46545172 agtaaatacagagggtctaaatccctcagtaatgcaattttgaattggttagtaaattgaggaattcttgtagtg 46545098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 6165519 - 6165598
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgttttt 207  Q
    |||||||||||||||  ||||||| ||||| |||||||||||||||| ||||||| |||   |||| ||||||| |||||    
T  6165519 agtaattactgagggcctaaatccctcagtgatgcaattttgaattggttagtaatttggagaattcttgtagttttttt 6165598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 13120272 - 13120217
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaa 183  Q
    |||||||||||||||| ||||||| |||   |||||||||||||||||||||||||    
T  13120272 agtaattactgagggtctaaatccctcatgtatgcaattttgaattgattagtaaa 13120217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 2620074 - 2620000
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| ||||||| ||| ||||||||| ||| |||| |||||| |||| | |||| ||||||||    
T  2620074 agtaattactgagggtctaaatccctcaataatgcaatattggattggttagtatattggggaattcttgtagtg 2620000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 19025150 - 19025097
Alignment:
Q  129 gtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaa 182  Q
    ||||||| ||||| | ||||||| |||||||||||||||||| ||| |||||||    
T  19025150 gtaattattgaggatctaaatccctcagtaatgcaattttgagttggttagtaa 19025097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 19288067 - 19288142
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 203  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| |||| |||||||||    
T  19288067 agtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatagaggaattcttgtagtgt 19288142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 17528472 - 17528512
Alignment:
Q  146 aaatccttcagtaatgcaattttgaattgattagtaaattg 186  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  17528472 aaatccctcagtaatgcaattttgaattggttagtaaattg 17528512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 29515279 - 29515353
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||| |||| ||||||||    
T  29515279 agtaattactgagggtctaaatccctcagtaatgtaattttgaattggttagtaaattgaggaattcttgtagtg 29515353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 52627439 - 52627383
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaat 184  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||    
T  52627439 agtaattactgagggtctaaatccctcggtaatgcaattttgaattggttagtaaat 52627383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 11907494 - 11907440
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaa 182  Q
    |||||||||||| ||| ||||| ||| |||||||||||||||||||| |||||||    
T  11907494 agtaattactgatggtctaaattcttgagtaatgcaattttgaattggttagtaa 11907440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 4889931 - 4889978
Alignment:
Q  155 agtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||||||| ||||||||||| | |||| ||||||||    
T  4889931 agtaatgcaattttgaattggttagtaaattggggaattcttgtagtg 4889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 4986407 - 4986328
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgttttt 207  Q
    |||||||| | ||||| ||||||| ||| |||||  ||||||||||| ||||||||||| | |||| |||||||| ||||    
T  4986407 agtaattattaagggtctaaatccctcactaatgtcattttgaattggttagtaaattggggaattcttgtagtgatttt 4986328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 1937841 - 1937890
Alignment:
Q  153 tcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| ||||| ||||||||||| | |||| ||||||||    
T  1937841 tcagtaatgcaattttaaattggttagtaaattggggaattcttgtagtg 1937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 18196270 - 18196343
Alignment:
Q  130 taattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 203  Q
    |||||| |||||||| ||| || |||||||||||||||| ||||| ||| ||| ||||  |||| |||||||||    
T  18196270 taattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagtgt 18196343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 26095330 - 26095379
Alignment:
Q  153 tcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||||||||| |||||| |||| | |||| ||||||||    
T  26095330 tcagtaatgcaattttgaattggttagtagattggggaattcttgtagtg 26095379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 37440512 - 37440437
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 203  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  37440512 agtaattaccgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattgaggaattcttgtagtgt 37440437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 9612516 - 9612439
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgttt 205  Q
    |||||||||||| ||||||||||| ||| |||||||||||| ||||| ||||||| |||   |||| |||||||||||    
T  9612516 agtaattactgacggtttaaatccctcactaatgcaattttaaattggttagtaatttggagaattcttgtagtgttt 9612439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 21688779 - 21688844
Alignment:
Q  137 tgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  21688779 tgagggtttaaatgcctcagtaatgcaattttgaattggttagtaatttgagaaattcttgtagtg 21688844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 15964254 - 15964179
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 203  Q
    |||||||| ||||||| ||||||| | |||||||||||||||||||| ||||||||||| | |||| |||||||||    
T  15964254 agtaattaatgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattggggaattcttgtagtgt 15964179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 21496788 - 21496830
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttga 170  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  21496788 agtaattattgagggtctaaatccctcagtaatgcaattttga 21496830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 21279684 - 21279741
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaatt 185  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  21279684 agtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatt 21279741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 31895087 - 31895013
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||| || |||||||||  |||| ||||||||    
T  31895087 agtaattactgagggtctaaatccctcaataatgcaattttgaattggttggtaaattgatgaattcttgtagtg 31895013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 31393303 - 31393377
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| ||||||| ||||||||||||| ||| |||| |||||| |||| | |||| ||||||||    
T  31393303 agtaattactgagggtctaaatccctcagtaatgcaatattggattggttagtatattggggaattcttgtagtg 31393377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 31202420 - 31202378
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttga 170  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||    
T  31202420 agtaattactaagggtctaaatccgtcagtaatgcaattttga 31202378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 32089911 - 32089857
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaa 182  Q
    |||||| ||||||| | ||||||| |||||||||||||||||| ||| |||||||    
T  32089911 agtaatcactgaggatctaaatccctcagtaatgcaattttgagttggttagtaa 32089857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 35092197 - 35092269
Alignment:
Q  135 actgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgttttt 207  Q
    ||||||||| ||||||| || ||||||||||||||||||| ||||||||||| |||||| |||||||| ||||    
T  35092197 actgagggtctaaatccctcggtaatgcaattttgaattggttagtaaattgggaaattcttgtagtgatttt 35092269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 41073413 - 41073339
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||||||| |||||||  |||||||||||| ||| |||| |||||| |||| | |||| ||||||||    
T  41073413 agtaattactgagggtctaaatcccacagtaatgcaatattggattggttagtatattggggaattcttgtagtg 41073339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 4666411 - 4666465
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaa 182  Q
    ||||||||||||||||| |||||| |||||||||  ||||| ||||| |||||||    
T  4666411 agtaattactgagggttaaaatccgtcagtaatgagattttcaattggttagtaa 4666465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 7255 - 7181
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||| ||| || |||| | |||| ||||||||    
T  7255 agtaattactgagagtctaaatccctcagtaatgcaattttgaattggttaatatattggggaattcttgtagtg 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 27554 - 27480
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||||||||||| ||| | ||| | |||||||||||||||||||||| ||||||||| | | |||| ||||||||    
T  27554 agtaattactgatggtctgaattcctcagtaatgcaattttgaattggttagtaaataggggaattcttgtagtg 27480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 18887693 - 18887767
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtg 202  Q
    |||| ||||| | ||| ||||||| | |||||||||||||||||||| ||||||||| | |||||| ||||||||    
T  18887693 agtagttactaaaggtctaaatccctaagtaatgcaattttgaattggttagtaaatcgggaaattcttgtagtg 18887767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 6731782 - 6731826
Alignment:
Q  128 agtaattactgagggtttaaatccttcagtaatgcaattttgaat 172  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  6731782 agtaattactgagggtctaaatccgtcagtaatgtaattttgaat 6731826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 22014071 - 22014021
Alignment:
Q  132 attactgagggtttaaatccttcagtaatgcaattttgaattgattagtaa 182  Q
    |||||||||||  ||||||| |||||||| ||||||||||||| |||||||    
T  22014071 attactgagggcctaaatccctcagtaattcaattttgaattggttagtaa 22014021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 284776 - 284703
Alignment:
Q  130 taattactgagggtttaaatccttcagtaatgcaattttgaattgattagtaaattgagaaatttttgtagtgt 203  Q
    |||||| |||||||| ||| || |||||||||||||||| ||||| ||| ||| ||||  |||| |||||||||    
T  284776 taattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagtgt 284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University