View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_18 (Length: 295)
Name: NF14936_low_18
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 281
Target Start/End: Original strand, 30838632 - 30838881
Alignment:
| Q |
32 |
aagaatatggcatccacctatatttctggtaaagcttatctttgcgaccatgtttctgacaattgaactgtggatctatgaaaggacaagttgaagggtc |
131 |
Q |
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| T |
30838632 |
aagaaaatggcatccacctatatttctggtaaagcttatctttgcgaccatgtttctgacaattgaactgtggatctatgaaaggacaagttgaagggtc |
30838731 |
T |
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| Q |
132 |
atagagaggatatgaagcgtcgtagacccatttgccacggaacaagttacatgttcctgcaatgttactgacttcaaagttggtctcattgctgaaagag |
231 |
Q |
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| T |
30838732 |
atagagaggatatgaagcgtcgtagacccatttgccacggaacaagttacatgttcctgcaatgttactgacttcaaagttggtctcattgctgaaagag |
30838831 |
T |
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| Q |
232 |
ttaaaatcttctgattttgtttggtgggaatacagaaacagagttagaaa |
281 |
Q |
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| T |
30838832 |
ttaaaatcctctgattttgtttggtgggaatacagaaacagagttagaaa |
30838881 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 39308806 - 39308906
Alignment:
| Q |
88 |
tgacaattgaactgtggatctatgaaaggacaagttgaagggtcatagagaggatatgaagcgtcgtagacccatttgccacggaacaagttacatgttc |
187 |
Q |
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||||||||||| ||||||||||| || ||||||| ||||| |||||||||||||| |||| ||| ||||||||||||||||| ||| |||||||| ||| |
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| T |
39308806 |
tgacaattgaattgtggatctataaagggacaagaagaaggatcatagagaggatacgaagggtcatagacccatttgccacgaaaccagttacatcttc |
39308905 |
T |
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| Q |
188 |
c |
188 |
Q |
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| T |
39308906 |
c |
39308906 |
T |
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