View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_19 (Length: 272)
Name: NF14936_low_19
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 20401144 - 20401393
Alignment:
| Q |
7 |
agcacagaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaatgcatcaatattatcacca |
106 |
Q |
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| T |
20401144 |
agcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaatgcatcaatattatcacca |
20401243 |
T |
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| Q |
107 |
atacctacccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagcacactttggtttcttaacaaactcaatatctacttcgtcag |
206 |
Q |
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| T |
20401244 |
atacctacccaagatgtagggaagtcatcatgagctagaacccattttgcagattcagcacactttggtttcttaacaaactcaatatctagttcgtcag |
20401343 |
T |
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| Q |
207 |
ttgtaaagatgacaccacgtcttactcgaatgataaatctaactggaaag |
256 |
Q |
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| T |
20401344 |
ttgtaaagatgacaccacgtcttactcgaatgataaacctaactggaaag |
20401393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 20433371 - 20433616
Alignment:
| Q |
7 |
agcacagaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaatgcatcaatattatcacca |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20433371 |
agcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaaagcatcaatattatcacca |
20433470 |
T |
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| Q |
107 |
atacctacccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagcacactttggtttcttaacaaactcaatatctacttcgtcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20433471 |
atacctacccaagatgtagggaaatcatcatgagcaagcacccatttggcagattcagcacactttggtttcttaacaaactcaatatctacttcatcag |
20433570 |
T |
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| Q |
207 |
ttgtaaagatgacaccacgtcttactcgaatgataaatctaactgg |
252 |
Q |
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| T |
20433571 |
ttgtaaagatgacaccacgttttactattatggtaaatctaactgg |
20433616 |
T |
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