View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_low_20 (Length: 269)

Name: NF14936_low_20
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_low_20
NF14936_low_20
[»] chr7 (25 HSPs)
chr7 (1-269)||(8515375-8515643)
chr7 (4-269)||(8488542-8488807)
chr7 (10-207)||(584071-584269)
chr7 (10-207)||(2842563-2842761)
chr7 (10-202)||(17503139-17503333)
chr7 (10-202)||(17549881-17550075)
chr7 (10-204)||(1837764-1837959)
chr7 (10-192)||(44592101-44592284)
chr7 (72-207)||(43788592-43788729)
chr7 (9-180)||(38974730-38974901)
chr7 (10-207)||(48293931-48294129)
chr7 (10-207)||(48557963-48558160)
chr7 (12-204)||(48767851-48768044)
chr7 (10-149)||(21294844-21294984)
chr7 (10-204)||(19735637-19735834)
chr7 (11-128)||(8352656-8352773)
chr7 (10-140)||(27399765-27399896)
chr7 (10-204)||(8055197-8055393)
chr7 (10-147)||(25173483-25173621)
chr7 (10-76)||(43786687-43786753)
chr7 (77-140)||(10071453-10071517)
chr7 (90-149)||(19735864-19735924)
chr7 (10-72)||(1964227-1964289)
chr7 (154-195)||(32455158-32455199)
chr7 (90-130)||(1964195-1964235)
[»] chr4 (31 HSPs)
chr4 (10-207)||(51175527-51175725)
chr4 (10-204)||(12191525-12191722)
chr4 (10-204)||(5744697-5744892)
chr4 (10-204)||(13678516-13678711)
chr4 (10-206)||(38068091-38068288)
chr4 (10-130)||(44991735-44991855)
chr4 (10-204)||(38068510-38068709)
chr4 (10-204)||(36904177-36904372)
chr4 (10-204)||(40445768-40445950)
chr4 (10-206)||(45832024-45832216)
chr4 (48-204)||(31767735-31767883)
chr4 (10-174)||(56397014-56397179)
chr4 (45-204)||(39720246-39720406)
chr4 (14-149)||(17058764-17058900)
chr4 (10-199)||(38168035-38168225)
chr4 (127-207)||(44991198-44991278)
chr4 (39-203)||(53096249-53096416)
chr4 (10-147)||(4711593-4711727)
chr4 (10-135)||(27085522-27085646)
chr4 (10-130)||(27064422-27064542)
chr4 (10-203)||(37450824-37451019)
chr4 (89-181)||(32409574-32409666)
chr4 (10-109)||(19853997-19854095)
chr4 (24-204)||(34929271-34929458)
chr4 (10-156)||(56228148-56228291)
chr4 (10-82)||(13665782-13665854)
chr4 (159-206)||(10364559-10364606)
chr4 (95-180)||(32139914-32140001)
chr4 (10-86)||(30482930-30483006)
chr4 (10-72)||(32409521-32409583)
chr4 (10-47)||(39719066-39719103)
[»] chr1 (27 HSPs)
chr1 (10-203)||(30627028-30627222)
chr1 (10-207)||(26991665-26991863)
chr1 (10-208)||(49650120-49650319)
chr1 (10-183)||(45467897-45468071)
chr1 (10-204)||(35718729-35718924)
chr1 (45-202)||(13003741-13003899)
chr1 (10-203)||(23082432-23082626)
chr1 (10-145)||(46688711-46688846)
chr1 (10-196)||(47675791-47675966)
chr1 (68-204)||(28522770-28522909)
chr1 (105-204)||(12705120-12705220)
chr1 (48-203)||(22767176-22767332)
chr1 (39-130)||(39092972-39093063)
chr1 (10-196)||(27162954-27163142)
chr1 (17-140)||(6597472-6597596)
chr1 (10-130)||(38790547-38790667)
chr1 (89-149)||(16255147-16255208)
chr1 (93-180)||(50011410-50011499)
chr1 (16-76)||(12705215-12705275)
chr1 (47-106)||(50011638-50011697)
chr1 (77-130)||(39739760-39739813)
chr1 (149-204)||(11426560-11426615)
chr1 (48-173)||(6661645-6661776)
chr1 (48-130)||(8045584-8045666)
chr1 (68-180)||(10472374-10472488)
chr1 (44-86)||(44343449-44343491)
chr1 (39-76)||(15456929-15456966)
[»] chr5 (18 HSPs)
chr5 (10-200)||(8516823-8517014)
chr5 (29-204)||(15958632-15958808)
chr5 (10-202)||(565356-565553)
chr5 (10-206)||(31066222-31066420)
chr5 (10-206)||(31046281-31046478)
chr5 (10-206)||(12883075-12883271)
chr5 (10-188)||(2553196-2553375)
chr5 (10-149)||(4898194-4898337)
chr5 (91-203)||(42075931-42076045)
chr5 (10-181)||(4396224-4396396)
chr5 (100-196)||(15491031-15491128)
chr5 (83-206)||(4740332-4740457)
chr5 (75-206)||(31051342-31051474)
chr5 (10-110)||(30312953-30313053)
chr5 (39-130)||(8787897-8787988)
chr5 (112-172)||(21571471-21571532)
chr5 (10-72)||(30350411-30350473)
chr5 (89-140)||(1922927-1922979)
[»] chr3 (23 HSPs)
chr3 (10-204)||(1151489-1151684)
chr3 (10-204)||(23059107-23059302)
chr3 (52-204)||(1294572-1294725)
chr3 (10-204)||(19611150-19611346)
chr3 (10-207)||(55222402-55222600)
chr3 (10-207)||(31833960-31834158)
chr3 (10-204)||(5992096-5992283)
chr3 (16-204)||(32552315-32552504)
chr3 (22-204)||(28131340-28131524)
chr3 (10-173)||(25701479-25701644)
chr3 (48-204)||(38585978-38586136)
chr3 (10-149)||(1559537-1559677)
chr3 (10-204)||(14903370-14903556)
chr3 (51-149)||(48098387-48098488)
chr3 (115-206)||(35539764-35539856)
chr3 (10-200)||(47142760-47142944)
chr3 (10-88)||(3935754-3935832)
chr3 (72-204)||(40243108-40243243)
chr3 (44-127)||(30732941-30733024)
chr3 (39-206)||(13778212-13778383)
chr3 (11-208)||(46981833-46982031)
chr3 (90-149)||(1291971-1292031)
chr3 (10-62)||(7325563-7325615)
[»] chr2 (22 HSPs)
chr2 (10-207)||(14332239-14332430)
chr2 (10-204)||(3703382-3703577)
chr2 (16-206)||(44059273-44059465)
chr2 (10-204)||(27559037-27559232)
chr2 (10-204)||(37456048-37456243)
chr2 (10-206)||(37847693-37847890)
chr2 (10-204)||(21848120-21848316)
chr2 (10-207)||(10624827-10625025)
chr2 (10-168)||(28967526-28967688)
chr2 (71-191)||(36750935-36751056)
chr2 (39-204)||(39446353-39446518)
chr2 (10-204)||(2968755-2968943)
chr2 (10-130)||(25749848-25749967)
chr2 (10-193)||(12184736-12184905)
chr2 (10-173)||(12863506-12863670)
chr2 (48-173)||(11916111-11916233)
chr2 (11-98)||(42029584-42029671)
chr2 (17-130)||(12671797-12671910)
chr2 (61-113)||(22558494-22558546)
chr2 (25-130)||(20680418-20680523)
chr2 (89-140)||(33553057-33553109)
chr2 (90-130)||(40204633-40204673)
[»] chr6 (12 HSPs)
chr6 (48-193)||(17095927-17096073)
chr6 (10-207)||(27752999-27753198)
chr6 (10-145)||(12919073-12919209)
chr6 (10-168)||(6812056-6812215)
chr6 (107-204)||(21447745-21447843)
chr6 (78-206)||(10364266-10364396)
chr6 (10-131)||(19687611-19687724)
chr6 (89-201)||(19687273-19687386)
chr6 (10-98)||(31766425-31766512)
chr6 (108-204)||(5693860-5693958)
chr6 (64-137)||(15617177-15617251)
chr6 (10-52)||(17096431-17096473)
[»] chr8 (17 HSPs)
chr8 (44-199)||(5423513-5423669)
chr8 (10-204)||(7176953-7177149)
chr8 (10-181)||(1581490-1581663)
chr8 (10-203)||(14523066-14523259)
chr8 (10-193)||(12532232-12532416)
chr8 (10-205)||(12795836-12796029)
chr8 (89-207)||(43976698-43976817)
chr8 (10-204)||(22800465-22800664)
chr8 (75-173)||(42374281-42374380)
chr8 (10-192)||(13282130-13282316)
chr8 (90-154)||(41438497-41438562)
chr8 (24-106)||(11989709-11989791)
chr8 (11-72)||(43976646-43976707)
chr8 (10-140)||(8692989-8693120)
chr8 (88-140)||(24319644-24319697)
chr8 (49-206)||(11767714-11767873)
chr8 (88-125)||(24320080-24320117)
[»] scaffold0020 (1 HSPs)
scaffold0020 (10-204)||(11372-11566)
[»] scaffold0568 (1 HSPs)
scaffold0568 (14-149)||(697-833)
[»] scaffold0086 (3 HSPs)
scaffold0086 (10-129)||(33197-33316)
scaffold0086 (130-207)||(36658-36735)
scaffold0086 (130-206)||(32827-32903)
[»] scaffold0110 (2 HSPs)
scaffold0110 (12-98)||(13678-13764)
scaffold0110 (12-98)||(21415-21501)
[»] scaffold0528 (1 HSPs)
scaffold0528 (75-206)||(1467-1599)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 8515643 - 8515375
Alignment:
Q  1 aggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8515643 aggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattcgagtccttattagtgtattgccattggagtcat 8515544  T
Q  101 tgaatccttaataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8515543 tgaatccttaataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaagaagtccttattagagaactaccattgtggatg 8515444  T
Q  201 ctcttagcttcatgatctgtgaccatagcttctttgtggatgctgcaagaatatcagtttatcacattc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8515443 ctcttagcttcatgatctgtgaccatagcttctttgtggatgctgcaagaatatcagtttttcacattc 8515375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 8488807 - 8488542
Alignment:
Q  4 agtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattga 103  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8488807 agtggaaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtcattga 8488708  T
Q  104 atccttaataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  8488707 atccttaataggtacttttattaaaaattataaataagtgatgtgtcacgtgaagtccatttaaagagtccttattagagaactaccattgtggatgctc 8488608  T
Q  204 ttagcttcatgatctgtgaccatagcttctttgtggatgctgcaagaatatcagtttatcacattc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8488607 ttagcttcatgatctgtgaccatagcttctttgtggatgctgcaagaatatcagtttttcacattc 8488542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 584071 - 584269
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||| |||||    
T  584071 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcctt 584170  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||||||| |||||||    
T  584171 aatagatacttttattaaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttgttaggaaaccaccattgtggatactcttag 584269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 2842563 - 2842761
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  2842563 aaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtcattgagtcctt 2842662  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||  ||   |||||||||||| |||||||||||    
T  2842663 aatatgtacttttattaaaatattataaataagtgatgtgtcacgtggggcccatttaaaaagtccttggtatgaaactaccattgtagatgctcttag 2842761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 17503333 - 17503139
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||| ||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17503333 aaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatcctt 17503234  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtg-tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgct 202  Q
    |||| ||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||  |||| ||||||||    
T  17503233 aatatgtaatttcattaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgct 17503139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 17549881 - 17550075
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||| ||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17549881 aaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatcctt 17549980  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtg-tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgct 202  Q
    |||| ||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||  |||| ||||||||    
T  17549981 aatatgtaatttcattaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgct 17550075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 1837764 - 1837959
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| ||||||||||||||| ||||  |||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| || ||    
T  1837764 aaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagtcttt 1837863  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||  |||||  ||||||||||| ||||||||||    
T  1837864 aataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctctattaaggaactaccattatggatgctct 1837959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 44592101 - 44592284
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||||| |||| ||| ||||||||||||||||||||  ||||||||||| || | |||    
T  44592101 aaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtcatcgagttctt 44592200  T
Q  110 aataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccat 192  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  || |||||||| ||||||    
T  44592201 aataggtacttttattaaaaacttataaataagtgatgtgtcacgtggggtccatttaaggaatttttgttagagaattaccat 44592284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 43788592 - 43788729
Alignment:
Q  72 ccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaagga 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  43788592 ccttattagtgtattgccattggagtcattgagtccttaataggtacttttattaaaaaattataaataagtgatgtgtcccgtggggtccatttaagga 43788691  T
Q  171 gtccttatt-agagaactaccattgtggatgctcttag 207  Q
    ||| || || | ||||||||||||||||||||||||||    
T  43788692 gtctttgttaaaagaactaccattgtggatgctcttag 43788729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 38974901 - 38974730
Alignment:
Q  9 aaaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcct 108  Q
    |||||||||||||||||||||||||| |  |||||| | |||||||||| ||||  || ||||||||||||||||| |  ||||||||||||||||||||    
T  38974901 aaaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtcattgaatcct 38974803  T
Q  109 taataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttatta 180  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  38974802 taatagatacttttattaaaatattataaataagtgatgtgtaacgtggggtccatttaaggagtccctatta 38974730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 48294129 - 48293931
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||||| ||||||  || |||  ||||||||||||||||||||| | |||||||||||| ||| || ||    
T  48294129 aaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtcttt 48294030  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||   |||||||||||||||||  | |||  ||||||||||| |||||||||||||    
T  48294029 aatatgtacttttattaaaatattataaataagtgatgtgtaacggaaggtccatttaaggagtctctgttaaggaactaccattctggatgctcttag 48293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 48557963 - 48558160
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||| ||||||||||||| |||| ||  |||||||||| |||| |||||| || |||||| ||||||  ||||||||||||||| |||||    
T  48557963 aaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtcattgagtcctt 48558061  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||||  || ||||||||||| |||||||||| ||||||||||||||||  ||||||||| |||| ||  |||| |||||||||||||||||||||||||    
T  48558062 aataaatatttttattaaaaaattataaatatgtgatgtgtcacgtggattccatttaaagagtactggttagtgaactaccattgtggatgctcttag 48558160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 48767851 - 48768044
Alignment:
Q  12 attatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaa 111  Q
    |||| |||||| |||||||||||||  |||| |||||||||||| | |||| |||||||||| | || ||||||| |||||||||||||||| |||||||    
T  48767851 attacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtccttaa 48767950  T
Q  112 taggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||| ||| ||||||||||||||| ||| |||| || |||||||||||| || |||||| |||||| | || | |||||||||||||||    
T  48767951 taggaactttcattaaaaaattataaataaatgaggtgtacatgtggggtccattaaaagagtccctattagtgtac-atcattgtggatgctct 48768044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 21294844 - 21294984
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtg--tattgccattggagtcattgaatcc 107  Q
    ||||||||| |||||||||||||||||  ||| |||||||||||| ||||||| ||||||||| |||||||||  ||||| | ||||||||||||| | |    
T  21294844 aaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtatattgtcgttggagtcattgagttc 21294943  T
Q  108 ttaataggtacttttattaaaaattataaataagtgatgtgt 149  Q
    ||||||  ||| ||||||||||||||||||||| ||||||||    
T  21294944 ttaataaatac-tttattaaaaattataaataaatgatgtgt 21294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 19735637 - 19735834
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| ||||||| |||||  |||| ||| |||||||||| ||||||||||| ||||||||| | | |||  |||| || |||| | |||||    
T  19735637 aaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattccttattaatttcttgttattgaagacattaagtcctt 19735736  T
Q  110 aataggtacttttatt---aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| |||||||||||   |||||| |||||||| | |||||| ||||| ||||||||||||||||||  |||||| | ||||||||||||||| ||||    
T  19735737 aatatgtacttttattaaaaaaaatcataaataaattatgtgtacacgt-gggtccatttaaggagtctctattagtggactaccattgtggatactct 19735834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 8352656 - 8352773
Alignment:
Q  11 aattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctta 110  Q
    |||| ||||| |||||||||||||||  |||| ||| ||||||||||||||| |||| ||||||||||||||||||| ||||| ||| ||||| | || |    
T  8352656 aattttttttttttaatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtattgtcattgaagttattgattactaa 8352755  T
Q  111 ataggtacttttattaaa 128  Q
    ||||||||||||||||||    
T  8352756 ataggtacttttattaaa 8352773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 27399765 - 27399896
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||  |||||||||||||  ||||| || ||||||| || |||| |||||||||  | ||||||||||| ||||||||||||||| |||||    
T  27399765 aaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtcattgagtcctt 27399864  T
Q  110 aataggtacttttatt-aaaaattataaataa 140  Q
    |||| | | ||||||| |||||||||||||||    
T  27399865 aataagaatttttattaaaaaattataaataa 27399896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 8055393 - 8055197
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||| | |||||||||||||  |||| ||| |||||||  | |||||||   | ||||| ||||||||||| |||||||||||||||  ||||    
T  8055393 aaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtcattgagccctt 8055294  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||| | |||||||| |||||||||||||| ||| |||| ||  || | |||||| || |||||||||||||  ||||| || |||| |||||||    
T  8055293 aataggaatttttattaaaaaattataaataaatgaggtgtacatatgagatccattaaaagagtccttattagtaaactatcagtgtgtatgctct 8055197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 25173483 - 25173621
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| ||||||||||||   |||| ||| |||||||||| |||| ||| |||||  | ||||||||||| ||||||||  ||||| |||||    
T  25173483 aaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggagatattgagtcctt 25173582  T
Q  110 aataggtacttttattaaa-aattataaataagtgatgt 147  Q
    ||||  || |||||||||| |||||||||||| ||||||    
T  25173583 aataaatatttttattaaataattataaataaatgatgt 25173621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 43786687 - 43786753
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtcctta 76  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||  ||||||||||||    
T  43786687 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 10071517 - 10071453
Alignment:
Q  77 ttagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataa 140  Q
    ||||| |||| |||||||||||||| |||| |||||| ||||||||||||||| |||||||||||    
T  10071517 ttagtttattaccattggagtcattaaatctttaataagtacttttattaaaacattataaataa 10071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 19735924 - 19735864
Alignment:
Q  90 attggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgtgt 149  Q
    |||||||||||||| || |||||  |||||||||||| |||||||||||||| ||||||||    
T  19735924 attggagtcattgagtctttaattagtacttttattaaaaaattataaataaatgatgtgt 19735864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 1964289 - 1964227
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtc 72  Q
    ||||||||||| | |||||||||||||  |||||||  ||||||| || ||||||||||||||    
T  1964289 aaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 32455158 - 32455199
Alignment:
Q  154 tggggtccatttaaggagtccttattagagaactaccattgt 195  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  32455158 tggggtccatttaagaagtccttattagtggactaccattgt 32455199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 1964235 - 1964195
Alignment:
Q  90 attggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    |||||||||||||||| |||||||  |||||||||||||||    
T  1964235 attggagtcattgaatacttaatatatacttttattaaaaa 1964195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 51175527 - 51175725
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  51175527 aaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcctt 51175626  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  51175627 aataggtacttttattaaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttgttagggaactaccattgtggatgctcttag 51175725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 12191525 - 12191722
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatc-ct 108  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||  |    
T  12191525 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtcattgagtcttt 12191624  T
Q  109 taataggtacttttatt--aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  12191625 taataagtacttttattaaaaaaattataaataagtgatttgtcacgtggggtccatttaaggattccttattagggaactaccattgtggatgctct 12191722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 5744892 - 5744697
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| ||| ||||  |||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||    
T  5744892 aaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagttctt 5744793  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||| |||| | ||||||||||||||| |||| |||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  5744792 aataggtactttttttaatagattataaataagtgacgtgtaacgtggggtccatttaaggagtccctattaaggaactaccattatggatgctct 5744697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 13678711 - 13678516
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||| ||||  |||||| |||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||| || ||    
T  13678711 aaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagtcttt 13678612  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||  |||||  ||||||||||| ||||||||||    
T  13678611 aataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctctattaaggaactaccattatggatgctct 13678516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 38068091 - 38068288
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||||||||| |  |||||||| |||||| || ||    
T  38068091 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggagccattgagtcatt 38068190  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    |||| ||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||| |||||  ||||||||||||| ||||||||||    
T  38068191 aatatgtatttttattaaaatattataaataaatgatgtgtaacatggggtccatttaaggagtccctattaaggaactaccattgtagatgctctta 38068288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 44991855 - 44991735
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  44991855 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattggagtccttattagtgtattgccattggagtcattgagtcctt 44991756  T
Q  110 aataggtacttttattaaaaa 130  Q
    |||||||||||||||||||||    
T  44991755 aataggtacttttattaaaaa 44991735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 38068510 - 38068709
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatat------ttaagtattttttattggagtccttattagtgtattgccattggagtcattga 103  Q
    ||||||||||| |||||||||||||||| ||||||||||||      ||||||| ||||  ||||||||||||||||||||||| |||| ||||||||||    
T  38068510 aaattatttttctttaatgatgtaaagatagtgggacatatttatatttaagtacttttctttggagtccttattagtgtattgtcattagagtcattga 38068609  T
Q  104 atccttaataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
     ||||||||||||||||||||| ||||||||||||||| |||||||  |||||| |||||||||| ||||||| ||||  ||||| ||||||||||||||    
T  38068610 gtccttaataggtacttttatt-aaaattataaataagcgatgtgtttcgtgggatccatttaagaagtccttgttaggaaactatcattgtggatgctc 38068708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 36904177 - 36904372
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||  | ||||||||||||||| | ||||||||||||||||||| | ||||||||| ||||||||||||    
T  36904177 aaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgtactcccattggagccattgaatcctt 36904276  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
     |||  |||||||||||||| ||||||||||| | |||||| || |||||||||||||| |||||  | ||| ||||||  |||||||||||||||    
T  36904277 gataaatacttttattaaaatattataaataaataatgtgtaacatggggtccatttaatgagtctctgttaaagaactgtcattgtggatgctct 36904372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 40445768 - 40445950
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||            |||||| |||||    
T  40445768 aaatcatttttgtttaatgatgtaaagatagtgggccatatttaagtatttttcgttggagtccttattagtgtat------------cattgagtcctt 40445855  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||    
T  40445856 aataaatacttttattaaaaaattataaattagtgatgtgtcacgtggggtccatttaaagagtccttgttcg-gaactaccattgtggatgctct 40445950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 45832216 - 45832024
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||   |||||| ||| | |||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||| | |||    
T  45832216 aaattatttttgtttaatg---taaagatagtagaacatatttaagtacctttcattggagtccttattagtgtattgccattggagtgattgagttctt 45832120  T
Q  110 aataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |  | || |||||||||||| |  ||||  |||||||||||||| ||||||||    
T  45832119 aataagtacttttattaaaaattataaataaatgatgtgtcacat-tgatcaatttaaggagtcatcgttaggaaactaccattgtggttgctctta 45832024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 31767883 - 31767735
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa-ttataaataagtgatg 146  Q
    |||||||||| |||| |||||||||| |||||||||||||         ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  31767883 tatttaagtacttttcattggagtccatattagtgtattg---------tcattgagtccttaataggtacttttattaaaaaattataaataagtgatg 31767793  T
Q  147 tgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  31767792 tgtcacatggagtccatttaagaagtccttattagagaactaccattgtggatgctct 31767735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 56397179 - 56397014
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||||||||||||  | ||  |||||||||||||||||| |||| |||||||||| | |||||| ||||||||||||| |||||||    
T  56397179 aaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtcattaaatcctt 56397080  T
Q  110 aataggtacttttattaaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtcc 174  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||  | ||||||||||||||||    
T  56397079 aataggtactttcattaaaaattataaataagtgatgtgtatacgtaagatccatttaaggagtcc 56397014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 39720246 - 39720406
Alignment:
Q  45 acatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtg 143  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||  |||| ||||||||| | ||||||||||||||||||| |||||||||||||||||     
T  39720246 acatatttaagtacttttaattggagtcattattagtgtattgtgattgaagtcattgagttcttaataggtacttttattaaaaaattataaataagtc 39720345  T
Q  144 atgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
     ||||||  |||| |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  39720346 gtgtgtcgtgtggagtccatttaaggagtcgttattaaggaactaccattgtggatgctct 39720406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 17058900 - 17058764
Alignment:
Q  14 tatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaata 113  Q
    |||||||||||||||||||||||| |||||| | |||||||||| |||| ||| ||||||||||||||||| | | |||||||||||||| |||||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  114 ggtacttttattaaaa-attataaataagtgatgtgt 149  Q
    | |||||||||||||| ||||||||||||||||||||    
T  17058800 gctacttttattaaaatattataaataagtgatgtgt 17058764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 38168225 - 38168035
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||||||||||||||   |||||| | |||||||||| |||| |||||||||||||||| |||||| | |||||||||||||| || ||    
T  38168225 aaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtcttt 38168126  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggat 199  Q
    ||||  |||||||||||||| |||||||||||||||| ||| | ||||||| |||||||  | ||  ||||| | ||||||||||||||||    
T  38168125 aataaatacttttattaaaatattataaataagtgatatgtaatgtggggttcatttaaaaaatctctattaaaaaactaccattgtggat 38168035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 44991278 - 44991198
Alignment:
Q  127 aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  44991278 aaaattataaataagtgatgtgtcacgtggggtccgtttaaggagtccttattagggaactaccattgtggatgctcttag 44991198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 53096249 - 53096416
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt--aaaaattataa 136  Q
    ||||||||||||| |||||  ||| ||| ||||| |||||||||||||| | || |||||||||| ||||||||| ||| ||| |||  |||||||||||    
T  53096249 agtgggacatattcaagtacgtttaattcgagtctttattagtgtattgtcgttagagtcattgagtccttaatatgtaatttcattaaaaaaattataa 53096348  T
Q  137 ataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||||||||||||| || | || |||| ||||||||||||||||||| | |||||||||||||||||||    
T  53096349 ataagtgatgtgtacatgcggagtccgtttaaggagtccttattagtgtactaccattgtggatgctc 53096416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 4711593 - 4711727
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  ||||  ||||||||||||    || |||||||||||||||| |||||| |||||| ||| ||| |||||||    
T  4711593 aaattatttttgtttaatgatgtaaagttagtgcaacatatttaagt----ttcattggagtccttattaatgtattaccattgaagttattaaatcctt 4711688  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgt 147  Q
    ||||| |||||||||| ||||||||||||||| ||||||    
T  4711689 aatagatacttttattaaaaaattataaataaatgatgt 4711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 27085646 - 27085522
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||||||||||||  |||| |||||||||||  | ||||||||||||||| ||||||||||||| |||| |||||||||||| |||    
T  27085646 aaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtcattgaattctt 27085547  T
Q  110 aataggtacttttattaaaaattata 135  Q
    ||||   |||||||||||||||||||    
T  27085546 aata-aaacttttattaaaaattata 27085522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 27064542 - 27064422
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||||||||||||  |||| |||||||||||  | ||||||||||||||| ||||||||||||| |||| |||||||||||| |||    
T  27064542 aaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtcattgaattctt 27064443  T
Q  110 aataggtacttttattaaaaa 130  Q
    ||||   ||||||||||||||    
T  27064442 aataaaaacttttattaaaaa 27064422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 37450824 - 37451019
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtat----tttttattggagtccttattagtgtattgccattggagtcattgaat 105  Q
    ||||||||||||  ||||||||||||   ||||| || |||||||||||    ||||||||| |||| | |||||| ||||| ||||||||||||||| |    
T  37450824 aaattatttttgggtaatgatgtaaaattagtgg-acctatttaagtatattttttttattgaagtcatcattagtatattgtcattggagtcattgagt 37450922  T
Q  106 ccttaataggtacttttatt-aaaaattataaataagtgatgtg-tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||||||   ||||||| ||| ||||||||||||||||||| |||  || ||||| || ||||||| ||||| |||||  | |||||||||||||||||||    
T  37450923 ccttaa---gtactttcattaaaaaattataaataagtgacgtgcacatgtgggatctatttaagaagtccctattaatggactaccattgtggatgctc 37451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 32409574 - 32409666
Alignment:
Q  89 cattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattag 181  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| |||| | | ||||||||||| ||||||| ||||    
T  32409574 cattggagtcattgagtctttaataggtacttttattaaaaaattataaataagtgatgtatcacat-gagtccatttaagaagtccttgttag 32409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 19853997 - 19854095
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||| |||||||||||  |||||| | |||||||||| ||||||||  |||||||||||||||| | ||| |||||||||||| |||||    
T  19853997 aaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgtactccca-tggagtcattgagtcctt 19854095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 34929271 - 34929458
Alignment:
Q  24 taatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagt---gtattgccattggagtcattgaatccttaataggtactt 120  Q
    |||| ||||||||  ||||| ||||||||| |||||||| |||||||||| || || |   ||||| |||||| |||||||  |||||||||| ||| ||    
T  34929271 taataatgtaaagttagtggaacatatttaggtatttttcattggagtccatactaatcatgtattaccattgaagtcatttgatccttaatatgtattt 34929370  T
Q  121 ttatt---aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||   ||||| ||||||||| |||||||| |||||| | || ||||||| ||||||||||||   | |||||||||| |||||||    
T  34929371 ttattaaaaaaaactataaataaatgatgtgtacacgtgagatctatttaagaagtccttattagttcagtaccattgtgaatgctct 34929458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 56228291 - 56228148
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||||||||||||||| |  |||||    ||||||| || |||| |||||||||||||||| |||| | |||||||||| ||||| || ||    
T  56228291 aaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagtgattgagtcttt 56228193  T
Q  110 aataggtacttttattaaaaattataaataagtgatgtgtcacgtgg 156  Q
    || |||||||||||||||||  |||| |||| |||||||| ||||||    
T  56228192 aacaggtacttttattaaaa--tatagataattgatgtgtaacgtgg 56228148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 13665854 - 13665782
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtg 82  Q
    |||||||||||||||||||||| ||||  |||||| |||||||||||| |||| ||| |||||||||||||||    
T  13665854 aaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 10364606 - 10364559
Alignment:
Q  159 tccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10364606 tccatttaaggagtccttattagtggactaccattgtggatgctctta 10364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 32139914 - 32140001
Alignment:
Q  95 agtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttatta 180  Q
    ||||||||||| ||||||| ||| ||||||| |||||||||||| ||||||||| | ||||||   |||||||||||||||| |||||    
T  32139914 agtcattgaattcttaatatgtatttttattaaaaaattataaacaagtgatgtatacacgtgaaatccatttaaggagtccatatta 32140001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 30483006 - 30482930
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtatt 86  Q
    |||||| |||||| |||||||||||||  | || ||| ||||||| |||||||||||||||||  ||||| ||||||    
T  30483006 aaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtatt 30482930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 32409521 - 32409583
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtc 72  Q
    |||||| ||||||||||||||||||||| | || | ||| |||||||| |||| |||||||||    
T  32409521 aaattacttttgtttaatgatgtaaagataatgtgtcatgtttaagtacttttcattggagtc 32409583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 39719066 - 39719103
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggaca 47  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  39719066 aaattatttttgtttaataatgtaaagatagtgggaca 39719103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 30627222 - 30627028
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||| ||||||| ||||||||||||| | |||||    
T  30627222 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtcattaagtcctt 30627123  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  30627122 aataggtacttttattaaaaaattataaataagtgatgtatcacgtgggatccatttaaggagtcattgttagagaactaccattgtggatgctc 30627028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 26991863 - 26991665
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| |||||    
T  26991863 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattagtgtattgttattggagtcattgagtcctt 26991764  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||  |||||||||||||||||||||||||    
T  26991763 aatgggtacttttattaaaaaattataaataagtgatatgtcacgtgaggtccatttaaagagtccttgttaaggaactaccattgtggatgctcttag 26991665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 49650120 - 49650319
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| |||||||  |||||||||||||| |||||    
T  49650120 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtcattgagtcctt 49650219  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttagc 208  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||  ||||||||||||||||||||||||||    
T  49650220 aataagtacttttattaaaaaattataaataagtgatttgtcacgtgaggttcatttaagaagtccttgttatggaactaccattgtggatgctcttagc 49650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 45468071 - 45467897
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||| ||||||||||||| |||||||    
T  45468071 aaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtcattaaatcctt 45467972  T
Q  110 aataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagag 183  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| || ||||||    
T  45467971 aataggtacttttattaaaaatttataaacaagtgatgtgtctcgtggggtccatttaaggagtcattgttagag 45467897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 35718924 - 35718729
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| | ||||||| |||| |||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||| | |||||    
T  35718924 aaattatttttgtttaataaagtaaagatagtgagacatatttaagtacttttcattggggtccttgttagtgtattgccattggagtcattaagtcctt 35718825  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||    
T  35718824 aatagatatttttattaaaaaattataaataagtgacgtgtcacgtggggtccatttaaggagtcattgttaaggaactaccattgtggatgctct 35718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 13003899 - 13003741
Alignment:
Q  45 acatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtg 143  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  13003899 acatatttaagtactttttattggagtccttattagtgtactcccattggagccattgaatccttaataggtacttttattaaaatattataaataagtg 13003800  T
Q  144 atgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgct 202  Q
    | |||| ||||  | | |||||||||||||| |||||  |||||| |||||||||||||    
T  13003799 acgtgtaacgtatgattcatttaaggagtccctattaaggaactatcattgtggatgct 13003741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 23082432 - 23082626
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||||||| |||||||  ||||     ||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  23082432 aaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgtactcccattggagccattgaatcctt 23082531  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
     ||| ||||||||||||||| ||||||||||| |||||||| || || ||||||||||| |||||  | ||| ||||||  ||||||||||||||    
T  23082532 gataagtacttttattaaaatattataaataaatgatgtgtaacatgaggtccatttaatgagtctctgttaaagaactgtcattgtggatgctc 23082626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 46688846 - 46688711
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||||||||||||  |||||| | |||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||| ||    
T  46688846 aaattatttttgtataatgatgtaaagttagtgggcc-tatttaagtacttttcattggagtcattattagtgtattgtcattggagtcattgaatcatt 46688748  T
Q  110 aataggtacttttatta-aaaattataaataagtgat 145  Q
    ||||| ||||||||||| |||||||||||||| ||||    
T  46688747 aatagatacttttattaaaaaattataaataaatgat 46688711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 47675966 - 47675791
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||  |||   ||||||||         ||||||| |||||    
T  47675966 aaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattgaagtattta---gtgtattg---------tcattgagtcctt 47675879  T
Q  110 aataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtg 196  Q
    ||||  ||||||||||||||| |||||||||| | |||||||| || |||||||||||| |||||||| |||||||||||||||||||    
T  47675878 aataaatacttttattaaaaaattataaataaataatgtgtcatgtagggtccatttaatgagtccttgttagagaactaccattgtg 47675791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 28522909 - 28522770
Alignment:
Q  68 gagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaattataaataagtg---atgtgt-cacgtggggtccat 163  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| || || ||| ||   |||||| |||||| |||| ||    
T  28522909 gagtccttattagtgtattgtcattggagtcattgagtccttaatatgtacttttattaaaaaata-aattaattgattatgtgtacacgtgaggtctat 28522811  T
Q  164 ttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||| |||||||||||| |||||| |||||||||||||||    
T  28522810 ttaagaagtccttattagtgaactatcattgtggatgctct 28522770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 12705220 - 12705120
Alignment:
Q  105 tccttaataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||  |||||||    
T  12705220 tccttaatagatacttttattaaaaaattataaataagtgatgtgtcacgtggagtccatttaaggagtccttgttagggaaataccattgcagatgctc 12705121  T
Q  204 t 204  Q
    |    
T  12705120 t 12705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 22767176 - 22767332
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatg 146  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||  |||||| ||||| ||| ||||||||||||||| ||||||||||| | |||    
T  22767176 tatttaagtatttttcattggagtccttattagtgtactcccattggaaccattgagtccttgataagtacttttattaaaatattataaataaataatg 22767275  T
Q  147 tgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||| || | |||||||||||| |||||  | ||| ||||||  ||||||| ||||||    
T  22767276 tgtaacatagggtccatttaatgagtctctgttaaagaactgtcattgtgaatgctc 22767332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 39092972 - 39093063
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||  |||||||    
T  39092972 agtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtcattgaatccttattaggtattttccttaaaaa 39093063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 27163142 - 27162954
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||| ||||||||  ||||  || |||||||| |||||| |||||||||  | ||||||||||| ||||||||||| |||||| ||    
T  27163142 aaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtcagtgaatcatt 27163043  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtg 196  Q
    |||| | || ||||||| |||||||||||||| ||| |||| || |||||||| ||| || |||||  |||||| | ||||||||||||    
T  27163042 aatatgaacatttattacaaaattataaataaatgaggtgtacatgtggggtctattaaaagagtctctattagtgtactaccattgtg 27162954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 6597472 - 6597596
Alignment:
Q  17 ttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggt 116  Q
    |||||| |||||||||||||  ||||  || ||||||| |||| || |||||||||||| |||||||| || ||||||||||||||| ||||||||| |     
T  6597472 ttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtcattgagtccttaataaga 6597571  T
Q  117 acttttattaaaa-attataaataa 140  Q
    | ||||||||||| |||||||||||    
T  6597572 atttttattaaaatattataaataa 6597596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 38790667 - 38790547
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||||||||||||  |||| ||| |||||||| |||||| |||||||||  |  || |||||| |||||||||| |||||||| ||    
T  38790667 aaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtctctggtactgtatttccattggagttattgaatcttt 38790568  T
Q  110 aataggtacttttattaaaaa 130  Q
    ||||   ||||||||||||||    
T  38790567 aatataaacttttattaaaaa 38790547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 16255208 - 16255147
Alignment:
Q  89 cattggagtcattgaatccttaataggtactttta-ttaaaaattataaataagtgatgtgt 149  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  16255208 cattggagtcattgagtccttaatatgtacttttatttaaaaattataaataaatgatgtgt 16255147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 50011499 - 50011410
Alignment:
Q  93 ggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttatta 180  Q
    ||||| |||||||||||||||  || |||||||| ||||||||||||||||||| ||| ||||||| |||||||||| |||||| |||||    
T  50011499 ggagttattgaatccttaatatatatttttattaaaaaattataaataagtgatatgtacacgtggagtccatttaaagagtccctatta 50011410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 12705275 - 12705215
Alignment:
Q  16 tttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtcctta 76  Q
    ||||||||||||||||||| || |||| |||||||||||||| |||| |||||||||||||    
T  12705275 tttttgtttaatgatgtaatgatagtgagacatatttaagtacttttcattggagtcctta 12705215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 50011697 - 50011638
Alignment:
Q  47 atatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatc 106  Q
    |||||||| || |||| |||||||||||||||| ||||||| ||||||||| ||||||||    
T  50011697 atatttaaatacttttgattggagtccttattattgtattgtcattggagttattgaatc 50011638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 39739813 - 39739760
Alignment:
Q  77 ttagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    ||||||||||| ||||||||||||||  ||||||||| | ||||||||||||||    
T  39739813 ttagtgtattgtcattggagtcattgggtccttaatatgaacttttattaaaaa 39739760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 11426615 - 11426560
Alignment:
Q  149 tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||||||||||| |||||  ||||  |||||||||||||||| ||||    
T  11426615 tcacgtggggtccatttaaggggtcctagttaggaaactaccattgtggatactct 11426560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 6661776 - 6661645
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaat--aggtacttttatt---aaaaattataaataagt 142  Q
    ||||||||||||||||||| |||||  ||  |||||||| |||||||||| |||| ||| |||||  |  ||||||||||   ||||| ||||||||| |    
T  6661776 tatttaagtattttttattagagtctctacaagtgtattaccattggagttattggatctttaatacatatacttttattaaaaaaaaatataaataaat 6661677  T
Q  143 gatgtgt-cacgtggggtccatttaaggagtc 173  Q
    |||||||  || || ||||| |||||||||||    
T  6661676 gatgtgtatacatgaggtccgtttaaggagtc 6661645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 8045666 - 8045584
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    |||| ||||| |||| |||||||||   | |||||||||  |||||||||||||  ||||||||| | |||||||||||||||    
T  8045666 tattcaagtacttttcattggagtctcgactagtgtattatcattggagtcattagatccttaatggatacttttattaaaaa 8045584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 10472488 - 10472374
Alignment:
Q  68 gagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccattt 165  Q
    |||||| | |||||||||   |||||||||||||| ||| |||||| | || ||||||| |||||||||||||| |||| ||| ||||||   || ||||    
T  10472488 gagtccatgttagtgtatcatcattggagtcattggatcattaataagaacgtttattaaaaaattataaataaatgatatgtacacgtgaaatctattt 10472389  T
Q  166 aaggagtccttatta 180  Q
    || ||||||||||||    
T  10472388 aaagagtccttatta 10472374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 44343449 - 44343491
Alignment:
Q  44 gacatatttaagtattttttattggagtccttattagtgtatt 86  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||    
T  44343449 gacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 15456929 - 15456966
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtcctta 76  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  15456929 agtgtgacatatttaagtatttttaattggagtcctta 15456966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 8517014 - 8516823
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||||||||||| |||| |||||||||| |||||    
T  8517014 aaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtcattgagtcctt 8516915  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatg 200  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  8516914 aataagtacttttattaaaaaattataaataaatgatgtgtcacgtggagtccatttaaggagtccttgttagggaactaccattgtggatg 8516823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 15958808 - 15958632
Alignment:
Q  29 atgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatta-a 127  Q
    ||||||||| ||| | ||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |    
T  15958808 atgtaaagatagttgaacatatttaagtacttttcattggagtccttattagtgtattgtcattggagttattgagtctttaataggtaattttattaaa 15958709  T
Q  128 aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||| |||| | ||||||||    
T  15958708 aaattataaataaatgatgtgtcacgtgtgatccatttaaggagtccttattaaagaactatcattatagatgctct 15958632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 565356 - 565553
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||| | ||||||| ||||   ||||| ||||||||||||| |||| | |||||||||||||||||||||| ||||||||| ||||| |||||    
T  565356 aaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagttattgagtcctt 565455  T
Q  110 aataggtacttttattaaaa----attataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgct 202  Q
    |||| ||||||| |||||||    | |||||||||||||||||| |||  ||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  565456 aataagtactttcattaaaaaattactataaataagtgatgtgtacacacggggtccatttaaggagtccttattagcggactaccattgtagatgct 565553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 31066420 - 31066222
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||||||||||||  |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| | |||||    
T  31066420 aaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtcattaagtcctt 31066321  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||| ||||||||||| |||||||||||||| | |||||| || ||      |||||||||||||| |||||| | ||||||||||||||||||||||    
T  31066320 aatagatacttttattaaaaaattataaataaataatgtgtacatgtcaaactcatttaaggagtccctattagtgtactaccattgtggatgctctta 31066222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 31046478 - 31046281
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||||||||||||  ||| ||||||||||||||||||||||||| | ||| ||||||||||||| | || |||||||||| |||||    
T  31046478 aaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtcctt 31046379  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||| ||||||||||| |||||||||||||| | || ||| || |||  |  |||||||||||||| ||||||   ||||||||| ||||||||||||    
T  31046378 aatagatacttttattaaaaaattataaataaataatttgtacatgtgaagctcatttaaggagtccctattag-ttactaccattatggatgctctta 31046281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 12883271 - 12883075
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgta-ttgccattggagtcattgaatcct 108  Q
    |||||||||||| |||||||| |||||  ||||||  ||||||||||| |||| |||||||| |||||||||||| ||  ||||||||||||||| || |    
T  12883271 aaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtcattgagtcat 12883173  T
Q  109 taataggtacttttattaaaa-attataaataagtgatgtgtcacgtggg-gtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||| ||||||||||||||| |||||| ||||||||  |||||||||||  || |||||| |||||  |||||  ||||||| ||||||||||||||||    
T  12883172 taataagtacttttattaaaatattatagataagtga--tgtcacgtgggattcaatttaaagagtctctattaaggaactactattgtggatgctctta 12883075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 2553196 - 2553375
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||| ||||||||||||||  ||||  | ||||||||||| |||| | || | |||||||||||||| | | |||| | |||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgtactcctattgaaatcattgaatcctt 2553295  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaacta 188  Q
    |||| ||| ||||||||||| |||| ||||||||||||||| ||||   ||||||||||  | ||||||||| |||||||    
T  2553296 aataagtatttttattaaaatattagaaataagtgatgtgtaacgtaaagtccatttaaaaaatccttattaaagaacta 2553375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 4898194 - 4898337
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagt-ccttattagtgtattgccattggagtcattgaatcct 108  Q
    ||||||||||||| |||| ||||||||  |||| ||| |||||||||| |||| |||||||| |||||||||||||||| ||||| |||  |||| | ||    
T  4898194 aaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagtcccttattagtgtattgtcattgaagttgttgagttct 4898293  T
Q  109 taataggtacttttatt---aaaaattataaataagtgatgtgt 149  Q
    ||||||||||||| |||   |||||| |||||||||||||||||    
T  4898294 taataggtactttcattaaaaaaaatgataaataagtgatgtgt 4898337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 42076045 - 42075931
Alignment:
Q  91 ttggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaacta 188  Q
    |||||||||||| ||| |||||| |||||||||||| |||||||||||||| ||| |||| |||||| ||||||||||| |||||||||||||   ||||    
T  42076045 ttggagtcattggatcattaataagtacttttattaaaaaattataaataaatgacgtgtacacgtgaggtccatttaatgagtccttattagtttacta 42075946  T
Q  189 ccattgtggatgctc 203  Q
     ||||| ||||||||    
T  42075945 tcattgcggatgctc 42075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 4396224 - 4396396
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||| | |||||||||||||  |||| | | ||||||||||||||| |||  ||||||| ||||| || ||||||||||||||||||||||||    
T  4396224 aaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtcattgaatcctt 4396323  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattag 181  Q
    ||||   | ||||||||||| ||||||||||| |||  ||| || || ||| ||||| || |||||||||||||    
T  4396324 aata-taaattttattaaaatattataaataaatgagatgtacatgtagggcccattaaatgagtccttattag 4396396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 15491128 - 15491031
Alignment:
Q  100 ttgaatccttaataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtg 196  Q
    ||||||||||  |||||| |||||||  |||||||||||||||||| ||||||||||||||| ||||||||| || || |||||||||||| ||||||    
T  15491128 ttgaatccttggtaggtatttttattttaaaattataaataagtgacgtgtcacgtggggtctatttaaggaatctttgttagagaactactattgtg 15491031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 4740457 - 4740332
Alignment:
Q  83 tattgccattggagtcattgaatccttaataggtactttta-ttaaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttatta 180  Q
    ||||| ||||||||||||||| ||||||||||||  ||| | | |||||||||||||||||||||||| ||| || |||||||||||  |||   |||||    
T  4740457 tattgtcattggagtcattgagtccttaataggttttttaactaaaaaattataaataagtgatgtgtacacatgaggtccatttaaaaagtttctatta 4740358  T
Q  181 gagaactaccattgtggatgctctta 206  Q
    | | ||||||||| ||||||||||||    
T  4740357 gtggactaccattatggatgctctta 4740332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 31051474 - 31051342
Alignment:
Q  75 tattagtgtattgccattggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagt 172  Q
    ||||||||||||| | || ||||||||||||| ||||||| ||||||||||| |||||||||||||| | |||||| || |||  |  | ||||||||||    
T  31051474 tattagtgtattgtctttagagtcattgaatctttaatagatacttttattaaaaaattataaataaataatgtgtacatgtgaagctcgtttaaggagt 31051375  T
Q  173 ccttattagagaactaccattgtggatgctctta 206  Q
    || ||||||   ||||||||||||||||||||||    
T  31051374 ccctattag-ttactaccattgtggatgctctta 31051342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 30313053 - 30312953
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||| ||| |  |||| ||||||| |||||||||  ||||||| |||| |||||||| ||||||| |||||    
T  30313053 aaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattggaatcattgagtcctt 30312954  T
Q  110 a 110  Q
    |    
T  30312953 a 30312953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 8787988 - 8787897
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    |||||||||||||||| || |||| ||| ||||   ||||||| ||||  |||||||||||||| ||| |||||| ||||||||||||||||    
T  8787988 agtgggacatatttaaatacttttaattcgagtgtatattagtatattatcattggagtcattggatctttaatatgtacttttattaaaaa 8787897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 21571532 - 21571471
Alignment:
Q  112 taggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagt 172  Q
    |||||||||||||||||| |||||||||||||||||||| | ||| | ||||||||| ||||    
T  21571532 taggtacttttattaaaatattataaataagtgatgtgtaatgtgagatccatttaatgagt 21571471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 30350473 - 30350411
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtc 72  Q
    |||||||||||||||||||||||||||  |||| ||| |  |||| ||||||| |||||||||    
T  30350473 aaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 1922979 - 1922927
Alignment:
Q  89 cattggagtcattgaatccttaataggtacttttatta-aaaattataaataa 140  Q
    |||||||||| ||| ||| |||||| |||||||||||| ||||||||||||||    
T  1922979 cattggagtcgttggatcattaataagtacttttattaaaaaattataaataa 1922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 1151684 - 1151489
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||||||||| | | |||||||| ||||| |||||    
T  1151684 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtacttctattggagttattgagtcctt 1151585  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||  |||||  |||||||||||||| |||||||    
T  1151584 aataagtacttttattaaaatattataaataagtgatgtgtaacgtggggttcatttaaggagtctctattaaggaactaccattgtgaatgctct 1151489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 23059107 - 23059302
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||| ||||  |||||| |||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||| || ||    
T  23059107 aaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagtcttt 23059206  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  23059207 aataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctttattaaggaactaccattatggatgctct 23059302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 1294572 - 1294725
Alignment:
Q  52 taagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgtc 150  Q
    |||||| |||| |||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggagacattgagtccttaatatgtacttttattaaaaaattataaataagtgatgtgtc 1294671  T
Q  151 acgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1294672 acgtggggtccatttaaggagtccttattaaggaactaccattgtggatgctct 1294725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 19611150 - 19611346
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| | | ||||||||||||||| ||||||||||||||| |||||    
T  19611150 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcctt 19611249  T
Q  110 aataggtacttttatt--aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||  |||||||||||  |||||| |||  ||| || |||| ||||||||||    
T  19611250 aataggtacttttattaaaaaaattataaataagtgatgtatcacgtgtagtccatttaagatgtccttgttaaggaagtatcattctggatgctct 19611346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 55222402 - 55222600
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||  |||||||||||||| ||||||||||||||| |||||    
T  55222402 aaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtcattgagtcctt 55222501  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    || | ||||||||||| |||||||||| ||||||||||| ||| ||| ||| |||||||||||| ||| |||| ||| ||||||||| |||| ||||||    
T  55222502 aacaagtacttttattaaaaaattatagataagtgatgtatcatgtgtggttcatttaaggagttcttgttagggaattaccattgttgatgttcttag 55222600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 31833960 - 31834158
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||||  ||||||||||||||||||| |||| |||||||||||| |   |||||||||||||| |||||    
T  31833960 aaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtcattgagtcctt 31834059  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||||  |||||||||||||| |||| | ||||||||| | | ||||| | ||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  31834060 aatatatacttttattaaaatattacatataagtgatctctaacgtgagatccatttaaggagtctttattaaagaactaccattgtggatgcttttag 31834158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 5992283 - 5992096
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||| |||||||||||||||| |||||||||||| |       ||| |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  5992283 aaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtcattgagtcctt 5992191  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| |||| |||||||||||||| |||||||    
T  5992190 aataaatacttttattaaaaaattataaataagtgatgtgtcacgt-gggtccatttaaagagttcttgttagggaactaccattgtgaatgctct 5992096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 32552315 - 32552504
Alignment:
Q  16 tttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaatagg 115  Q
    |||||||||||||||||||||  | |||||| ||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||| ||||||||| |    
T  32552315 tttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtcattgagtccttaataag 32552414  T
Q  116 tacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||| |||||||||| |||||||||||||||||| | | ||||| || |||||| |||||  |||||  ||||||||||| ||||||||||    
T  32552415 tacctttattaaaatattataaataagtgatgtataatgtgggatctatttaaagagtctctattaaggaactaccattctggatgctct 32552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 28131340 - 28131524
Alignment:
Q  22 tttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttt 121  Q
    |||||||||||||||  |||| ||| |||||||||| ||||||| ||||||||| |||||||||| ||||||||||||| |  || ||||||| ||||||    
T  28131340 tttaatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatacttt 28131439  T
Q  122 tatt--aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||  |||||||||||||||||||||||| || | ||| |||||||||||||||| ||||| || | ||||||||| ||||||||    
T  28131440 tattaaaaaaattataaataagtgatgtgtacatgcgggatccatttaaggagtccctattaaag-attaccattgtagatgctct 28131524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 25701644 - 25701479
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||| ||||||||   ||| ||| |||||||||| |||| |||| ||| ||||||||||||||| |||||||||| ||||||||||    
T  25701644 aaattatttttgtataataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatcctt 25701545  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtc 173  Q
    |||||||||||| ||| ||||||||||||||| ||| |||| |||||| ||||||||||| |||||    
T  25701544 aataggtactttcattaaaaaattataaataaatgacgtgtacacgtgaggtccatttaaagagtc 25701479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 38585978 - 38586136
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatg 146  Q
    ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||| | |    
T  38585978 tatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcattaaaaaattataaataagtaacg 38586077  T
Q  147 tgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||| || |||  ||||||||||||||||  | |||| | ||||||||||||||||||||    
T  38586078 tgtacaagtgaagtccatttaaggagtctatgttagtgtactaccattgtggatgctct 38586136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 1559677 - 1559537
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||| |||||||| |||||||||||||  |||| ||| ||||||||||||||| ||| |||| ||||||||||||||| ||||||||| ||||| | |||    
T  1559677 aaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagttattgagttctt 1559578  T
Q  110 aataggtacttttattaaa-aattataaataagtgatgtgt 149  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  1559577 aatagatatttttattaaacaattataaataagtgatgtgt 1559537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 14903370 - 14903556
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||| ||||  |||||| ||||||||  || |||| ||| ||||| ||||||||||||||         ||||||| |||||    
T  14903370 aaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattg---------tcattgagtcctt 14903460  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    || ||||||||||||||  | ||||||||||||||| |||| |||||||||||||||||||||||| |||||  |||| |||||| ||||||||||    
T  14903461 aacaggtacttttattagtatattataaataagtgacgtgtaacgtggggtccatttaaggagtccctattaaggaacaaccattatggatgctct 14903556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 48098387 - 48098488
Alignment:
Q  51 ttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa---ttataaataagtgatgt 147  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||   |||||||||| ||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtcattgaatccttaatacgtatttttattaaaaaaagttataaataattgatgt 48098486  T
Q  148 gt 149  Q
    ||    
T  48098487 gt 48098488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 35539856 - 35539764
Alignment:
Q  115 gtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||    
T  35539856 gtacttttattaaaatattataaataagtgatgtgtaacgtggggtccacttaaggagtccctattaaggaactaccattgtggatgctctta 35539764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 47142760 - 47142944
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||| ||||||||||  |||| ||| |||||||||| |||| |||||||||||||||||| | ||| |||||||||||        ||    
T  47142760 aaattatttttgtttagtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggagtca--------tt 47142851  T
Q  110 aataggtactttt-attaaaaattataaataagtgatgtg-tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatg 200  Q
    ||||| ||||||| |  ||||||||||||||| | || ||  |||||| |||||||||||||||||  | |||| | ||||||||||||||||    
T  47142852 aatagatacttttaaaaaaaaattataaataaattatatgaacacgtgaggtccatttaaggagtctcttttagtggactaccattgtggatg 47142944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 3935832 - 3935754
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgc 88  Q
    |||||||||||||||||||||||||||| | || |||||||||||||| |||| |||||||||||| |||| |||||||    
T  3935832 aaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattgc 3935754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 40243108 - 40243243
Alignment:
Q  72 ccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt--aaaaattataaataagtgatgtgt-cacgtggggtccatttaag 168  Q
    |||||||||||||||| |||| ||||||||||||| |||| |  |||||| |||  |||||| ||||| || |||||||| |||||||| ||||||||||    
T  40243108 ccttattagtgtattgtcattagagtcattgaatcattaaaatatactttcattaaaaaaatcataaacaaatgatgtgtgcacgtgggatccatttaag 40243207  T
Q  169 gagtccttattagagaactaccattgtggatgctct 204  Q
    |||||  ||||||   | ||||||||||||||||||    
T  40243208 gagtctctattagtagattaccattgtggatgctct 40243243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 30733024 - 30732941
Alignment:
Q  44 gacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaa 127  Q
    ||||||||||| || |||| |||||| ||||||||| ||||||| ||||||||||||||| | ||||||||||| |||||||||    
T  30733024 gacatatttaactacttttaattggaatccttattaatgtattgtcattggagtcattgagttcttaataggtatttttattaa 30732941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 13778212 - 13778383
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt---aaaaattata 135  Q
    |||| |||||||||||| | |||| ||||||||| || ||| ||||||| |||| |||||||||| ||||||||| | |||||||||   ||||| | ||    
T  13778212 agtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtcattgagtccttaatatgaacttttattgaaaaaaaatgta 13778311  T
Q  136 aataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||| ||| |||| ||||||||| ||||| || |||||  |||||  | ||||||||||  ||||||||||    
T  13778312 aataaatgaggtgtacacgtggggcccattaaacgagtctatattaatggactaccattgcagatgctctta 13778383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 46981833 - 46982031
Alignment:
Q  11 aattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctta 110  Q
    ||||| |||||| |||||||||||||  |||| ||| ||||||  || |||| | || ||  ||||||||||||||| ||||||||||||  ||  ||||    
T  46981833 aattacttttgtataatgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggagtcatataactctta 46981932  T
Q  111 ataggtacttttattaaaaat-tataaataagtgatgtg-tcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttagc 208  Q
    |||| |||||||||||||||| |||||||||  ||| ||   |||||  || ||||||| |||||||||||||   |||  |||||||||||||||||||    
T  46981933 atagatacttttattaaaaatatataaataaacgatatgcagacgtgaagttcatttaa-gagtccttattagtttactttcattgtggatgctcttagc 46982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 1292031 - 1291971
Alignment:
Q  90 attggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgt 149  Q
    ||||||||||||||||||||||||  || ||||||||||| ||| ||||||||||||||||    
T  1292031 attggagtcattgaatccttaataaatatttttattaaaatattttaaataagtgatgtgt 1291971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 7325615 - 7325563
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttt 62  Q
    |||||||||||||||||||||||||||  |||| || |||||||| |||||||    
T  7325615 aaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatattttt 7325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 14332430 - 14332239
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||| |  ||| |||  ||||||| |||||||||||| |||| |||||||||||||||    
T  14332430 aaattatttttgtttaatgatgtaaagatactggaacatatttaagcacatttcattatagtccttgttagtgtattgctattgaagtcattgaatcctt 14332331  T
Q  110 aataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    |||| ||||||||||||||      | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  14332330 aatatgtacttttattaaa------atataagtgatgtgtcacgtggggtccatttaaggagtccttgttagggaactaccattgtggatgctcttag 14332239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 3703577 - 3703382
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||||| ||| |||||| ||||||||| | ||||||||| |||||| |||  ||||||||||| |||||    
T  3703577 aaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatttccaccggagtcattgagtcctt 3703478  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||||||||| |||| | ||||| |||||||||||||||||||||||    
T  3703477 aataggtacttttattaaaatattataaataaatgatgtgtaatgtgaggtccatttaaagagttcatattaaagaactaccattgtggatgctct 3703382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 44059273 - 44059465
Alignment:
Q  16 tttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgcca-ttggagtcattgaatccttaatag 114  Q
    |||||| ||||||| ||||||  |||||||  |||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||| |||||||||     
T  44059273 tttttgattaatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgtactcccaattggagtcattgagtccttaataa 44059372  T
Q  115 gtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    ||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  44059373 gtacttttattaaaatattataaataaatgatgtgtaatgtggggtccatttaaggagttcttgttaaagaactaccattgtggatgctctta 44059465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 27559037 - 27559232
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| ||| ||||  |||||| ||||||||||||||||| ||| || ||||||||| ||||||||||||||||||||| | | |||    
T  27559037 aaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtcattaagttctt 27559136  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||| |||| | ||||||||||||||| |||| |||||||||| ||||||||||||| |||||  ||||||||||| ||||||||||    
T  27559137 aataggtactttttttaatagattataaataagtgacgtgtaacgtggggtctatttaaggagtccctattaaggaactaccattatggatgctct 27559232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 37456048 - 37456243
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| ||| ||||  |||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||    
T  37456048 aaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagttctt 37456147  T
Q  110 aataggtacttttattaa-aaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||| ||||||| |||| | ||||||||||||||| |||| |||||||||||||||||||| ||| |||||  ||||||||||| ||||||||||    
T  37456148 aatagttactttttttaatagattataaataagtgacgtgtaacgtggggtccatttaaggaatccctattaaggaactaccattatggatgctct 37456243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 37847693 - 37847890
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||||| |||||||||  |||| | | ||||||||||||||| ||| ||||||||||||||||  | |||||||||||||||| |||||    
T  37847693 aaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgttcttccattggagtcattgagtcctt 37847792  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    |||| ||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||| |||||   |||||||||| | ||||||||||    
T  37847793 aatatgtacttttattaaaatattataaataagtgatgtctaacgtggggttcatttaaggagtccctattaatcaactaccattatagatgctctta 37847890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 21848316 - 21848120
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| ||||||| |||||  |||||||| |||||||||| |||||||||||||| | |||||||||||  ||||||||||||||| |||||    
T  21848316 aaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtcattgagtcctt 21848217  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |||||||| || ||||||||||  |||||||| | ||| || |||||||||||||    
T  21848216 aataagtatttttattaaaaaattataaataagtgatgtgtacacgtgggatctatttaaggaggtcttattagtgtacttcctttgtggatgctct 21848120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 10624827 - 10625025
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||||| ||||||||| ||||  ||||||||| ||||| ||||     
T  10624827 aaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagttattgagtccta 10624926  T
Q  110 aataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    | || |||||||||||||||| ||||||||||||||||||||||||||  | |||||||| ||||||| |||  |||| ||  ||||||||||||||||    
T  10624927 agtaagtacttttattaaaaagttataaataagtgatgtgtcacgtggatttcatttaagaagtccttgttaaggaaccactgttgtggatgctcttag 10625025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 28967688 - 28967526
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||||| |||| ||||||||| |||||| | ||||| |||||||||||||||||||||    
T  28967688 aaattatttttgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtcattgaatcctt 28967589  T
Q  110 aataggtacttttatt----aaaaattataaataagtgatgtgtcacgtggggtccatttaag 168  Q
    |||||||| |||||||    ||| ||||||||||||||||||||||||| ||||| |||||||    
T  28967588 aataggtatttttattattaaaatattataaataagtgatgtgtcacgtagggtctatttaag 28967526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 36750935 - 36751056
Alignment:
Q  71 tccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaagg 169  Q
    ||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  36750935 tccttattagtatattgtcattggagtcattaaatctttaataggtacttttattaaaaaattataaataagtgatgtgtcccgtggggtccatttaagg 36751034  T
Q  170 agtccttattagagaactacca 191  Q
    | ||||| |||| |||||||||    
T  36751035 attccttgttagggaactacca 36751056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 39446353 - 39446518
Alignment:
Q  39 agtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaa 137  Q
    ||||| ||||||||||||| |||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||| ||| ||| ||| ||||||||||||    
T  39446353 agtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcattaaaaaattataaa 39446450  T
Q  138 taagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||||||||| ||||||  ||||||||||| ||||| |||||  | |||||||| |||||||||||    
T  39446451 taagtgatgtgtacacgtgtagtccatttaagtagtccatattactgtactaccatcgtggatgctct 39446518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 2968943 - 2968755
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||  | |||||||||| ||||  |||||||||||||||||||| | | ||||||| |||||| | |||    
T  2968943 aaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgtactcctattggagccattgagttctt 2968844  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||       |||||||||||| ||| | |||||  ||| ||||||||||||| ||||    
T  2968843 aataagtacttttattaaaatattataaataagtgatgtgt-------ggtccatttaagaagttcatattaaggaattaccattgtggattctct 2968755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 25749967 - 25749848
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||| ||||||||  |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||    
T  25749967 aaattatttttgtataataatgtaaagttagtgggacatatttaagtatttttcat-ggagttcttattagtgtattgccattggagtcattgagtcctt 25749869  T
Q  110 aataggtacttttattaaaaa 130  Q
    || | ||||||| ||||||||    
T  25749868 aacatgtactttcattaaaaa 25749848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 12184736 - 12184905
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||| | |  |||||||||||||| ||||||||||||||| ||||     
T  12184736 aaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtcattgagtcct- 12184833  T
Q  110 aataggtacttttattaaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccatt 193  Q
     ||           | |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  12184834 -at-----------taaaaaattataaataagtgatgtgtcacgtgtggtccatttaagaagtccttgttagggaactaccatt 12184905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 12863670 - 12863506
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||||| ||| |||||  ||||||   ||||||||||||||| ||||  ||||||||||  ||| | | |||||||||||||| |||||    
T  12863670 aaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttattaaggtactactattggagtcattgagtcctt 12863571  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtc 173  Q
    |||| ||| ||||||||||| |||||||||||||||||||| ||||| ||| ||||||| |||||    
T  12863570 aatatgtatttttattaaaatattataaataagtgatgtgtaacgtgtggttcatttaaagagtc 12863506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 11916233 - 11916111
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa-ttataaataagtgatg 146  Q
    ||||||||||||||| ||| ||||| |||||||||||||| |||| ||||| |     |||||||||||||||| |||||||| |||||||||| | |||    
T  11916233 tatttaagtatttttaatttgagtctttattagtgtattgacattagagtcgt-----ccttaataggtactttcattaaaaaattataaataaataatg 11916139  T
Q  147 tgt-cacgtggggtccatttaaggagtc 173  Q
    | | ||||||||||||||||||||||||    
T  11916138 tatacacgtggggtccatttaaggagtc 11916111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 42029671 - 42029584
Alignment:
Q  11 aattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtc 98  Q
    ||||||||||||||||||||||||||  ||| |||  ||||||||||||||| |||| |||| |||||||||||||| ||||||||||    
T  42029671 aattatttttgtttaatgatgtaaagttagttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagtc 42029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 12671797 - 12671910
Alignment:
Q  17 ttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggt 116  Q
    |||||| |||| ||||||||  ||| ||||  |||||| ||||||| |||||||||  ||||||||||||| |||| |||||||||||||||||| |  |    
T  12671797 ttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtcattgaatccttaacaaat 12671896  T
Q  117 acttttattaaaaa 130  Q
    | ||||||||||||    
T  12671897 atttttattaaaaa 12671910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 22558546 - 22558494
Alignment:
Q  61 tttattggagtccttattagtgtattgccattggagtcattgaatccttaata 113  Q
    ||||| |||||| |||||||||||||| ||||||||||||| |||||||||||    
T  22558546 tttatcggagtctttattagtgtattgtcattggagtcattcaatccttaata 22558494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 20680523 - 20680418
Alignment:
Q  25 aatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttat 124  Q
    ||||||||||||  | || ||||||| ||||||||||| ||||||||| ||||||  || || |||||  ||| |||||||  ||||  | |||||||||    
T  20680523 aatgatgtaaagttaatgagacatatctaagtatttttcattggagtctttattaacgtttttccattaaagttattgaatttttaacggatacttttat 20680424  T
Q  125 taaaaa 130  Q
    ||||||    
T  20680423 taaaaa 20680418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 33553057 - 33553109
Alignment:
Q  89 cattggagtcattgaatccttaataggtactttta-ttaaaaattataaataa 140  Q
    ||||||||||||||| ||| |||| | |||||||| |||||||||||||||||    
T  33553057 cattggagtcattgagtccataattgatacttttatttaaaaattataaataa 33553109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 40204633 - 40204673
Alignment:
Q  90 attggagtcattgaatccttaataggtacttttattaaaaa 130  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  40204633 attggagtcattgagttcttaatatgtacttttattaaaaa 40204673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 17096073 - 17095927
Alignment:
Q  48 tatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatg 146  Q
    |||||||||| |||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17096073 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcatagaatccttaataggtacttttattaaaaaattataaataagtgatg 17095974  T
Q  147 tgtcacgtggggtccatttaaggagtccttattagagaactaccatt 193  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||    
T  17095973 tgtcacgtggggtccatttaaggagtccctattaaaaaactaccatt 17095927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 27753198 - 27752999
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||||||||| |||||||  |||||||| |||||||||| |||| ||| |||||||||||||||||||| |||| ||||||||||||||||    
T  27753198 aaattagttttgtttaatgttgtaaagttagtgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatcctt 27753099  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    ||||||||||||||||| ||||||||||||||||||| ||| || ||| | || ||||||||||||  ||||||   ||||||| | || ||||||||||    
T  27753098 aataggtacttttattaaaaaattataaataagtgatatgtacatgtgagatctatttaaggagtctctattagtagactaccactatgaatgctcttag 27752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 12919073 - 12919209
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||| | | ||||  |||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| | |||||    
T  12919073 aaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagtcctt 12919172  T
Q  110 aataggtacttttattaa-aaattataaataagtgat 145  Q
    ||||||||||||| |||| | ||||||||||||||||    
T  12919173 aataggtactttttttaatagattataaataagtgat 12919209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 6812056 - 6812215
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| |||||||||||||  ||||| || |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| | |||    
T  6812056 aaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtcattgagttctt 6812155  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaag 168  Q
    ||||| |  ||| ||| ||||||||||||||| |||| ||| || ||| ||||||||||||    
T  6812156 aatagat-gtttaattaaaaaattataaataaatgatatgtacatgtgtggtccatttaag 6812215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 21447745 - 21447843
Alignment:
Q  107 cttaataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  21447745 cttaataggtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtccctattaaggaactaccattatggatgctct 21447843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 10364266 - 10364396
Alignment:
Q  78 tagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgt-cacgtggggtccatttaaggagtcct 175  Q
    ||||||||||||||| |||| |||||||||||||||   ||||||||||||| ||||||||||| ||| |||| || ||| |||||||| |||||||||     
T  10364266 tagtgtattgccatttgagttattgaatccttaatataaacttttattaaaacattataaataaatgaggtgtacatgtgaggtccattcaaggagtccc 10364365  T
Q  176 tattagagaactaccattgtggatgctctta 206  Q
    |||||| |||||||||||||| || ||||||    
T  10364366 tattagtgaactaccattgtgaatactctta 10364396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 19687611 - 19687724
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||        | ||||||||||||||||||||| |||||    
T  19687611 aaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc--------tatattgccattggagtcattgagtcctt 19687702  T
Q  110 aataggtacttttattaaaaat 131  Q
    |||| ||  |||||||||||||    
T  19687703 aatatgtctttttattaaaaat 19687724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 19687386 - 19687273
Alignment:
Q  89 cattggagtcattgaatccttaataggtacttttattaaaaa-ttataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaact 187  Q
    ||||||||||||||| || ||||||| |  |||||||||||| ||| |||||||||||||||||||| | || |||||||| | ||||| |||  |||||    
T  19687386 cattggagtcattgagtctttaatagatctttttattaaaaaattacaaataagtgatgtgtcacgtagagttcatttaagaaatccttcttaaggaact 19687287  T
Q  188 accattgtggatgc 201  Q
    | |||| |||||||    
T  19687286 atcattatggatgc 19687273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 31766512 - 31766425
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtc 98  Q
    |||| |||||||| |||| ||||||||  |||||||  |||||||||| | ||||||||||| ||||||||||||||| |||| |||||    
T  31766512 aaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttattggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 5693860 - 5693958
Alignment:
Q  108 ttaataggtacttttattaaaaa-ttataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||| ||||||| |||||||| ||||||| || |||| | | ||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  5693860 ttaatatgtactttcattaaaaaattataaacaaatgatatctacacgtggagtccatttaaggagtctttattactgtactaccattgtgaatgctct 5693958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 15617177 - 15617251
Alignment:
Q  64 attggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaa-aaattataaa 137  Q
    |||||||| | |||||||||||| | ||| ||||||||||||| | |||| ||| ||||||||| ||||||||||    
T  15617177 attggagttcatattagtgtattacaattagagtcattgaatcatcaataagtatttttattaataaattataaa 15617251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 17096473 - 17096431
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatattt 52  Q
    |||||||||||||||||||||||||||| ||| |||| |||||    
T  17096473 aaattatttttgtttaatgatgtaaagatagtaggacctattt 17096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 5423513 - 5423669
Alignment:
Q  44 gacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagt 142  Q
    |||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||| |||||||||||||||||    
T  5423513 gacatatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcattgagtcattaatatgtacttttattaaaaaattataaataagt 5423612  T
Q  143 gatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggat 199  Q
    |||| |||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  5423613 gatgcgtcacgtggggtccatttaaggagtctttgttagggaactaccattgtggat 5423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 7177149 - 7176953
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||| ||||| |||||||  |||||||| |||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  7177149 aaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtcctt 7177050  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    ||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||| | |||| |||| ||||||||||    
T  7177049 aatagatactttcattaaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattagtgtactatcattatggatgctct 7176953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 1581490 - 1581663
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||| |||||||| | |||||    
T  1581490 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtcattaagtcctt 1581589  T
Q  110 aataggtacttttat--taaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattag 181  Q
    |||||||  || |||   ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  1581590 aataggtgtttctataaaaaaaattataaataagtgatgtgtcacgtgatgtccatttaaggagtccttgttag 1581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 14523259 - 14523066
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| |||| | |||||||||||||||||||||| ||||| ||||||||| | |||    
T  14523259 aaattatttttgtttaatgatgtaaagatagtggaacatatttaagtacttttcagtggagtccttattagtgtattgtcattgaagtcattgagttctt 14523160  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctc 203  Q
    ||||  ||||||||||| |||||||||||||| ||||||||||| || |||| | ||||| |||||||||||  ||| ||||||| |||||||||    
T  14523159 aataactacttttattaaaaaattataaataaatgatgtgtcacatgtggtcta-ttaagaagtccttattaaggaattaccattatggatgctc 14523066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 12532416 - 12532232
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||| || || ||||||||||||| |||||||||||||||| |||||    
T  12532416 aaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtcattgagtcctt 12532317  T
Q  110 aataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccatt 193  Q
    |||||||| ||||||||||| |||||||||||| ||| ||||| ||| | ||  |||||||||||||| |||  |||||||||||    
T  12532316 aataggtatttttattaaaatattataaataagcgatatgtcatgtgtgatctgtttaaggagtccttgttaaggaactaccatt 12532232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 12796029 - 12795836
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||||||||||||||||||||||||  |||||| | |||||||||| |||| ||||||||||||| ||||||| | |||||| ||||||||| |||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgtactaccattgaagtcattgagtcctt 12795930  T
Q  110 aataggtacttttatta-aaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctt 205  Q
    ||||| ||||||||||| |||||||||||||| |||||||| |||||||   ||||  |||||||||||||||  | ||||||||||||||||||||    
T  12795929 aatagatacttttattaaaaaattataaataaatgatgtgtaacgtggg--tcattgtaggagtccttattag-tagctaccattgtggatgctctt 12795836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 43976698 - 43976817
Alignment:
Q  89 cattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaact 187  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||    
T  43976698 cattggagtcattgagtccttaataggtacttttattaaaaaattataaataaatgatgtgtcacgtggggtccatttaagaagtccttgttagggaact 43976797  T
Q  188 accattgtggatgctcttag 207  Q
    ||||||||||||||||||||    
T  43976798 accattgtggatgctcttag 43976817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 22800664 - 22800465
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||||||||||||  |||||||| ||||||||||  ||| |||||||||| ||||||||||||| ||||||||||||||| |||||    
T  22800664 aaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtcattgagtcctt 22800565  T
Q  110 aataggtacttttatt----aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||  | |||| ||    ||||||||||||||| |||||||| || |||| ||||||||||||||| | |||||| | ||||||||||||||||||||    
T  22800564 aatagacattttttttattaaaaaattataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactaccattgtggatgctct 22800465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 42374281 - 42374380
Alignment:
Q  75 tattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgtcacgtggggtccatttaaggagtc 173  Q
    |||||||||| |  ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||    
T  42374281 tattagtgtactttcattggagtcattgagtccttaataggtacttttattaaaacattataaataagtgatgtgtaacgtgtggtccatttaaagagtc 42374380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 13282130 - 13282316
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtatttttt---attggagtccttattagtgtattgccattggagtcattgaatc 106  Q
    |||||| ||||||||||||||||||||  |||||||  ||||||| || |||||   || ||||| ||  ||||||||||| |||| |||||||||||||    
T  13282130 aaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtcattgaatc 13282229  T
Q  107 cttaataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagtccttattagagaactaccat 192  Q
    ||||||| |||| |||||| ||||||||| ||||| |||||||| ||  ||   |||||||||||||||| ||||| |||||||||||    
T  13282230 cttaatatgtacgtttattaaaaaattatgaataaatgatgtgtacatatgaaatccatttaaggagtccctatta-agaactaccat 13282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 41438497 - 41438562
Alignment:
Q  90 attggagtcattgaatccttaataggtacttttattaaaa-attataaataagtgatgtgtcacgt 154  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||| ||||    
T  41438497 attggagtcattgaatccttaataaatacttttattaaaatattataaataagtgatgtgtaacgt 41438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 11989791 - 11989709
Alignment:
Q  24 taatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatc 106  Q
    ||||||||||||   |||| |||||||||||| | |||| |||||||||| | ||||||||||| ||||||||||||||||||    
T  11989791 taatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtcattgaatc 11989709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 43976646 - 43976707
Alignment:
Q  11 aattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtc 72  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||    
T  43976646 aattgtttttgtttaatgatgtaaagatagtgggatatatttaagtacttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 8693120 - 8692989
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    |||||| |||||| |||| ||||||||  ||| |||| |||||||  | |||| |||||| |||||||| || ||||| ||||| ||||||||| | |||    
T  8693120 aaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtcattgagttctt 8693021  T
Q  110 aataggtacttttatt-aaaaattataaataa 140  Q
    |||||  | ||||||| |||||||||||||||    
T  8693020 aatagaaatttttatttaaaaattataaataa 8692989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 24319697 - 24319644
Alignment:
Q  88 ccattggagtcattgaatccttaataggtactttta-ttaaaaattataaataa 140  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24319697 ccattgaagtcattgaatccttaataggtaattttatttaaaaattataaataa 24319644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 11767873 - 11767714
Alignment:
Q  49 atttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatta-aaaattataaataagtgatgt 147  Q
    ||||||| | |||| |||| ||||| | ||||||||||| |||||| |||||||| | ||||||| | | |||||||| |||| ||||||||| ||| ||    
T  11767873 atttaagcacttttcattgaagtccctgttagtgtattgtcattggtgtcattgagtacttaatatgaatttttattaaaaaaatataaataaatgaggt 11767774  T
Q  148 gt-cacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    || ||  || |||||||| ||||| ||| ||||||   ||||||||| | ||||||||||    
T  11767773 gtacatatgaggtccattaaaggaatccctattagttgactaccattatagatgctctta 11767714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 24320117 - 24320080
Alignment:
Q  88 ccattggagtcattgaatccttaataggtacttttatt 125  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  24320117 ccattggagtcattgagtccttaataagtacttttatt 24320080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 11566 - 11372
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| |||| ||| |||||||||||||| ||||  ||||| ||||||| |||| ||    
T  11566 aaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt-acattgaagtcattaaatcttt 11468  T
Q  110 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctct 204  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||| | |||||||||  ||||  | ||| |||| ||  ||||||||||||||    
T  11467 aataggtaattttattaaaaaattataaataagtgatgtgtcatgtgagatccatttaaaaagtcgatgttaaagaattattattgtggatgctct 11372  T

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Target: scaffold0568 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 833 - 697
Alignment:
Q  14 tatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatccttaata 113  Q
    |||||||||||||||||||||||| |||||| | |||||||||| |||| ||| ||||||||||||||||| | | |||||||||||||| |||||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  114 ggtacttttattaaaa-attataaataagtgatgtgt 149  Q
    | |||||||||||||| |||||||||| |||||||||    
T  733 gctacttttattaaaatattataaatacgtgatgtgt 697  T

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Target: scaffold0086 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 33316 - 33197
Alignment:
Q  10 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtcattgaatcctt 109  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||| |||| |||| ||||||| | |||||| |   |||| ||||||| | |||||    
T  33316 aaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgtactcttattgaagtcattaagtcctt 33217  T
Q  110 aataggtacttttattaaaa 129  Q
    ||||||||||||||||||||    
T  33216 aataggtacttttattaaaa 33197  T

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Target: scaffold0086; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 36735 - 36658
Alignment:
Q  130 attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctcttag 207  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||  |||||  |||| ||||||||||||||| ||||    
T  36735 attataaataagtgatgtgtaacgtgtggttcatttaaggagtctctattaaggaaccaccattgtggatgctattag 36658  T

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Target: scaffold0086; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 32903 - 32827
Alignment:
Q  130 attataaataagtgatgtgtcacgtggggtccatttaaggagtccttattagagaactaccattgtggatgctctta 206  Q
    |||| ||||||||||||||| | ||| |||||||||||||||||  |||||  ||| ||||||||||||||||||||    
T  32903 attacaaataagtgatgtgtaatgtgtggtccatttaaggagtctctattaaggaattaccattgtggatgctctta 32827  T

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Target: scaffold0110 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 13678 - 13764
Alignment:
Q  12 attatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtc 98  Q
    ||||||||| | |||||||||||||  |||||||| ||||||| ||||||  |||||| ||||||||||||||||| ||||||||||    
T  13678 attatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggagtc 13764  T

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Target: scaffold0110; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 21415 - 21501
Alignment:
Q  12 attatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattggagtccttattagtgtattgccattggagtc 98  Q
    ||||||||| | |||||||||||||  |||||||| ||||||| ||||||  |||||| ||||||||||||||||| ||||||||||    
T  21415 attatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggagtc 21501  T

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Target: scaffold0528 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 1467 - 1599
Alignment:
Q  75 tattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatgtgt-cacgtggggtccatttaaggagt 172  Q
    ||||||||||||| | || ||||||||||||| ||||||| |||||||||| ||||||||||||||| | |||||| || |||  |  | ||||||||||    
T  1467 tattagtgtattgtctttagagtcattgaatctttaatagatacttttattaaaaaattataaataaataatgtgtacatgtgaagctcgtttaaggagt 1566  T
Q  173 ccttattagagaactaccattgtggatgctctta 206  Q
    || ||||||   ||||||||||||||||||||||    
T  1567 ccctattag-ttactaccattgtggatgctctta 1599  T

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