View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14936_low_24 (Length: 240)

Name: NF14936_low_24
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14936_low_24
NF14936_low_24
[»] chr3 (3 HSPs)
chr3 (18-240)||(24617734-24617956)
chr3 (130-240)||(24105876-24105985)
chr3 (130-240)||(24113288-24113404)
[»] chr8 (6 HSPs)
chr8 (24-117)||(1343438-1343531)
chr8 (24-117)||(1356056-1356149)
chr8 (18-116)||(1360543-1360641)
chr8 (18-115)||(1349886-1349983)
chr8 (22-111)||(11366705-11366794)
chr8 (18-56)||(1353313-1353351)
[»] chr7 (1 HSPs)
chr7 (22-115)||(29389268-29389361)
[»] chr2 (2 HSPs)
chr2 (27-115)||(43365122-43365210)
chr2 (32-116)||(43369275-43369359)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 24617956 - 24617734
Alignment:
Q  18 ccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617956 ccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 24617857  T
Q  118 tttgtaatactaatacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617856 tttgtaatactaatacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaa 24617757  T
Q  218 atagaagtgtagatacttggttt 240  Q
    |||||||||||||||||||||||    
T  24617756 atagaagtgtagatacttggttt 24617734  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 24105876 - 24105985
Alignment:
Q  130 atacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaaatagaagtgtag 229  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||| ||    
T  24105876 atacttgctgctcgatttagaactttgttctccacatcacaagtaga-aagttaggagtatttgatcattacatgcctcttttttcaaatagaagtgcag 24105974  T
Q  230 atacttggttt 240  Q
    |||||||||||    
T  24105975 atacttggttt 24105985  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 24113288 - 24113404
Alignment:
Q  130 atacttgcggctcgatttagaactttgttctccacatcacaa---------gtagataagttaacagtatttgatcattacatgcctctcttttcaaata 220  Q
    ||||||||||||| |||||||||||||||||||||| |||||         |||||||||||| ||||||||||||||||||||||||   |||||||||    
T  24113288 atacttgcggctcaatttagaactttgttctccacaccacaatgtatgtcagtagataagttagcagtatttgatcattacatgcctc---tttcaaata 24113384  T
Q  221 gaagtgtagatacttggttt 240  Q
    ||||||||||||||| ||||    
T  24113385 gaagtgtagatacttagttt 24113404  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 1343531 - 1343438
Alignment:
Q  24 acgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 117  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343531 acgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 1343438  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 1356056 - 1356149
Alignment:
Q  24 acgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 117  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356056 acgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt 1356149  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 1360641 - 1360543
Alignment:
Q  18 ccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 116  Q
    ||||||| ||||| |||| |||||||||||||||||||| | ||||||||| || | |||| || |||||||||||||| |||| ||||||||||||||    
T  1360641 ccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactcttggaagatcct 1360543  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1349983 - 1349886
Alignment:
Q  18 ccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc 115  Q
    ||||||| ||||| |||| ||||||||||||||||| || | |||| || |||| | ||||||||||||||||||||||||||| ||||| |||||||    
T  1349983 ccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatattggagaactcttgcaagatcc 1349886  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 11366794 - 11366705
Alignment:
Q  22 gtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaag 111  Q
    |||| |||| ||||||||| ||||||||||||||| | | |||||||||| ||||||||||||||||||||| || | || |||||||||    
T  11366794 gtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaattcttggaag 11366705  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 1353351 - 1353313
Alignment:
Q  18 ccttgtacgtgatcaaatcgacaataatcaagaattaag 56  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  1353351 ccttttacgtgatgaaatcgacaataatcaagaattaag 1353313  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 29389268 - 29389361
Alignment:
Q  22 gtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc 115  Q
    |||| |||| ||| |||||||||||||||| |||| | ||||| ||||||| ||||| || |||||||||||| | | || | |||||||||||    
T  29389268 gtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatttttggaagatcc 29389361  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 43365122 - 43365210
Alignment:
Q  27 tgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc 115  Q
    |||| |||||||||||||| |||||| ||| |  |||||| || | |||| |||||||||||||||| || | || |||||||||||||    
T  43365122 tgatgaaatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactgcacaattcttggaagatcc 43365210  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 43369275 - 43369359
Alignment:
Q  32 aaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 116  Q
    |||||||||||||| |||||||||| |  |||||| || | | || ||||||||||||||| ||| | || ||||||||||||||    
T  43369275 aaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcct 43369359  T

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