View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_25 (Length: 237)
Name: NF14936_low_25
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9424036 - 9423831
Alignment:
| Q |
18 |
tgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgcc |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9424036 |
tgtaattattgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttacgcaattcaactcgtacaaattgttgcc |
9423937 |
T |
|
| Q |
118 |
acagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9423936 |
acagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagt |
9423837 |
T |
|
| Q |
218 |
agaaac |
223 |
Q |
| |
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|||||| |
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| T |
9423836 |
agaaac |
9423831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9444269 - 9444064
Alignment:
| Q |
18 |
tgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgcc |
117 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444269 |
tgtaattgttgtaattgattgattgcaccaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgcc |
9444170 |
T |
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| Q |
118 |
acagtggtctgggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444169 |
acagtggtctgggtcgtgttttagtcggaatggataagttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagt |
9444070 |
T |
|
| Q |
218 |
agaaac |
223 |
Q |
| |
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|||||| |
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| T |
9444069 |
agaaac |
9444064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9417984 - 9418105
Alignment:
| Q |
18 |
tgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgcc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9417984 |
tgtaattcttgtaattgattgattgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgcc |
9418083 |
T |
|
| Q |
118 |
acagtggtctgggtcgtgtttt |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
9418084 |
acagtggtctgggtcgtgtttt |
9418105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 9418102 - 9418157
Alignment:
| Q |
168 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaac |
9418157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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