View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_5 (Length: 415)
Name: NF14936_low_5
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 19395937 - 19395628
Alignment:
| Q |
1 |
actagagttgttatggtgaaataaaactcatagttatatttgtacttt---tggaacag----atatgcttattttgtaattacaaagcaagcagaatga |
93 |
Q |
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| T |
19395937 |
actagagttgttatggtgaaataaaactcatagttatatttgtacttttgatggaacagatatatatgcttattttgtaattacaaagcaagcagaatga |
19395838 |
T |
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| Q |
94 |
cttgaaccaataattattctataatttatccagacacataaatttcatcggagtagtgcttcacttcactggaagcgatataactatcaatcactgacac |
193 |
Q |
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| T |
19395837 |
cttgaaccaataattattctataatttatccagacacataaatttcatcggagtagtgcttcacttcactggaagcgatataactatcaatcactgacac |
19395738 |
T |
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| Q |
194 |
atacttagacacaagatatgacacagacacatgtcaataatttaagaaaatagaagtgattaatgtcgatattagacattggcacatcttcaatctcata |
293 |
Q |
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| T |
19395737 |
atacttagacacaagatatgacacagacacatgtcaataatttaagaaaatagaagtgattaatgtcgatattagacattggcacatcttcaatctcata |
19395638 |
T |
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| Q |
294 |
acttcacaaa |
303 |
Q |
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| T |
19395637 |
acttcacaaa |
19395628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 18871210 - 18871349
Alignment:
| Q |
80 |
agcaagcagaatgacttgaaccaataattattctat-aatttatccagacacataaatttcatcggagtagtgcttcacttcactggaagcgatataact |
178 |
Q |
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| T |
18871210 |
agcaagcaacatgacttgaaccaattattattcttttaatttatccagacacataaatttcatcggagtactgcttcacttcactggaaggggcatatct |
18871309 |
T |
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| Q |
179 |
atcaatcactgacacatacttagacacaagatatgacaca |
218 |
Q |
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| T |
18871310 |
ttcaatcacaggcacatacatatacataagacatgacaca |
18871349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 19383304 - 19383243
Alignment:
| Q |
337 |
ttaaaccataactcaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgt |
398 |
Q |
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| T |
19383304 |
ttaaaccataacacaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgt |
19383243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 19402205 - 19402128
Alignment:
| Q |
300 |
caaatataaacttcgatgtaagatttgaatttatagtttaaaccataactcaactcaaactatcatttcaaagtcatc |
377 |
Q |
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| T |
19402205 |
caaatataaatttcaatgtaagtttttagtttatagtttcaaccataactcaactcaaactatccattaaaagtcatc |
19402128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 18167029 - 18166981
Alignment:
| Q |
34 |
ttatatttgtacttttg---gaacagatatgcttattttgtaattacaa |
79 |
Q |
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| T |
18167029 |
ttatatttgtacttttgatggaacagatatgcttattttgtaattacaa |
18166981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 18871377 - 18871407
Alignment:
| Q |
229 |
aataatttaagaaaatagaagtgattaatgt |
259 |
Q |
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| T |
18871377 |
aataatttaagaaaatagaagtgattaatgt |
18871407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 19395631 - 19395601
Alignment:
| Q |
368 |
caaagtcatcaatgtcaacatgtcctcatgt |
398 |
Q |
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| T |
19395631 |
caaagtcatcaatgtcaacatgtcctcatgt |
19395601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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