View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14936_low_8 (Length: 365)
Name: NF14936_low_8
Description: NF14936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14936_low_8 |
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| [»] scaffold0014 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 83171 - 83014
Alignment:
| Q |
13 |
gaacctgtgtgacgacgtatgtctaatataatttgcatagacttatttgtcatttccttgtacacgaaagttcgccacgccattattgaaaatttccggc |
112 |
Q |
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|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| | || |
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| T |
83171 |
gaacctatgtgacgatgtatatctaatataatttgcatagacttatttgtcatttccttatacacgaaagttcgccacg-cactattgaaaattttcagc |
83073 |
T |
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| Q |
113 |
tatgataaacattttgccattccacctctcattctccgagatatcaacaaccgaattta |
171 |
Q |
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| T |
83072 |
tttgataaacattttgccattccacctctcattctccgagatatcaacaacggaattta |
83014 |
T |
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Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 83014 - 82973
Alignment:
| Q |
196 |
agttgttacgaatcgtggtgattgatctggaagttagggtac |
237 |
Q |
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| T |
83014 |
agttgttacgaatcgtggtgattgatctggaaattagagtac |
82973 |
T |
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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 31209876 - 31209948
Alignment:
| Q |
279 |
cctcaagattgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
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|||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31209876 |
cctcaagattgttgtagaattagtcataagagttatctacaaataataatcatcatatataaatagaagcatc |
31209948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 31206445 - 31206510
Alignment:
| Q |
286 |
attgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
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| T |
31206445 |
attgttgtagaattagtcataagaattatctacaaataataatcatcatatataaatagaagcatc |
31206510 |
T |
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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 6671192 - 6671264
Alignment:
| Q |
279 |
cctcaagattgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
6671192 |
cctcaagattgttgtataattagtcgtaagaattatccaaaaatcataatcatcatatataaatagaagcatc |
6671264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 895763 - 895699
Alignment:
| Q |
287 |
ttgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
895763 |
ttgttgtataattagtcatgagaattatctacaaataataatcatcatatataattagaagcatc |
895699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 6667529 - 6667592
Alignment:
| Q |
288 |
tgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
6667529 |
tgttgtataattagtcataagaattatccaaaaatcataatcatcaaatataaatagaagcatc |
6667592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 26118 - 26181
Alignment:
| Q |
288 |
tgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
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||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
26118 |
tgttgtataattaatcataagaatcatctacaaataataatcatcatatataaatagaagcatc |
26181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 1043666 - 1043603
Alignment:
| Q |
288 |
tgttgtataattagtcataagaattatctaaaaataataatcatcatatataaatagaagcatc |
351 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
1043666 |
tgttgtaaaattagtcataagaattatctacaaaaaataatcatcatatataaatagaagcatc |
1043603 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 31307214 - 31307268
Alignment:
| Q |
296 |
aattagtcataagaattatctaaaaataataatcatcatatataaatagaagcat |
350 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||||||||||| |||||| |
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| T |
31307214 |
aattaatcataagaattatctccaaataataatcaacatatataaatataagcat |
31307268 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 1788743 - 1788772
Alignment:
| Q |
322 |
taataatcatcatatataaatagaagcatc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
1788743 |
taataatcatcatatataaatagaagcatc |
1788772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 21185110 - 21185166
Alignment:
| Q |
279 |
cctcaagattgttgtataattagtcataagaattatctaaaaataataatcatcata |
335 |
Q |
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|||||||||||||||| || |||||||| ||||| ||| |||||||||||| |||| |
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| T |
21185110 |
cctcaagattgttgtaaaagtagtcatatgaattctctctaaataataatcagcata |
21185166 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 34233995 - 34233954
Alignment:
| Q |
196 |
agttgttacgaatcgtggtgattgatctggaagttagggtac |
237 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
34233995 |
agttgttacgaatcgtggtgattgatccggaaattagagtac |
34233954 |
T |
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