View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14937_high_3 (Length: 250)
Name: NF14937_high_3
Description: NF14937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14937_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 8823035 - 8823144
Alignment:
| Q |
3 |
agacaccagatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttag |
102 |
Q |
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| T |
8823035 |
agacaccagatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttag |
8823134 |
T |
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| Q |
103 |
taaaaatcac |
112 |
Q |
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|||||||||| |
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| T |
8823135 |
taaaaatcac |
8823144 |
T |
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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 8823177 - 8823273
Alignment:
| Q |
145 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgtttcttcttcttcttg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8823177 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgttttttcttcttcttg |
8823273 |
T |
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