View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14937_low_1 (Length: 633)
Name: NF14937_low_1
Description: NF14937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14937_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 44859005 - 44858684
Alignment:
| Q |
20 |
cgttagtcactgcagatttcaagtcccacagatactccaactgctgagatacctcagtcgaaccaggttcaatcggcattgtaagaaacaccaaaacctt |
119 |
Q |
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| T |
44859005 |
cgttagtcactgcagatttcaagtcccacagatactccaactgctgagatacctcagtcgaaccaggttcaatcggcattgtaagaaacaccaaaacctt |
44858906 |
T |
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| Q |
120 |
aactgaaaatttcaacaacaaaaataaaactcaacaccaactaatccaatgaatcaaatctcaaacagaaaatttactcaatttttataaacttaaacct |
219 |
Q |
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| T |
44858905 |
aactgaaaatttcaacaacaaaaataaaactcaacaccaaccaatccaatgaatcaaatctcaaacagaaaatttactcaatttttataaacttaaacct |
44858806 |
T |
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| Q |
220 |
gcattgagaagcatgctacgatcttggtggtaatgctctataatcggtaccaaatcctttgaaacgatgttccatttacacacttgcttgaacacatcgc |
319 |
Q |
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| T |
44858805 |
gcattgagaagcatgctacgatcttggtggtaatgctctataatcggtaccaaatcctttgaaacgatgttccatttacacactagcttgaacacatcgc |
44858706 |
T |
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| Q |
320 |
gggattgcggatcatcacgtct |
341 |
Q |
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| T |
44858705 |
gggattgcggatcatcacgtct |
44858684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 463 - 621
Target Start/End: Complemental strand, 44858562 - 44858404
Alignment:
| Q |
463 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttcaatggcgccgagaccgctgcagattaggga |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44858562 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttcaatggcgccgagaccgctgcagattaggga |
44858463 |
T |
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| Q |
563 |
taatccatcggtgtccatggtgtttgggttttgagagaacgaagagatttggggatttt |
621 |
Q |
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| T |
44858462 |
taatccatcggtgtccatggtgtttgggttttgagagaacgaagagatttggggatttt |
44858404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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