View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14937_low_10 (Length: 239)
Name: NF14937_low_10
Description: NF14937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14937_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 1301902 - 1302120
Alignment:
| Q |
3 |
agatataaacttatatttttactgatcttttttataagaaacaattgannnnnnnagatacattcaataatatgagctacttaaaaatatggcattgcca |
102 |
Q |
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| T |
1301902 |
agatataaacttatatttctaccgatcttttttataagaaacaattgatttttt-agatacattcaataatatgagctccttaaaaatatggcattgcca |
1302000 |
T |
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| Q |
103 |
aagatcctaaaagataccttagtcaacaactttttcatcaaagtacacccatgtccaccaatggccatccaattaaattaacgtgctgtaatgatcaaat |
202 |
Q |
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| T |
1302001 |
aagatcctaaaaaataccttagccaacaactttttcatcaaagtacacccatatccaccaatggccatccaattaaattaacgtgctgtaatgatcaaat |
1302100 |
T |
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| Q |
203 |
ctagaaacaatatgtagggt |
222 |
Q |
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| T |
1302101 |
ctagaaacaatatgtagggt |
1302120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 1289128 - 1289192
Alignment:
| Q |
156 |
tccaccaatggccatccaattaaattaa-cgtgctgtaatgatcaaatctagaaacaatatgtag |
219 |
Q |
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| T |
1289128 |
tccaccaatgtccatccaattaatttaaacgtactgtagtaatcaaatctagaaacaatatgtag |
1289192 |
T |
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