View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14937_low_12 (Length: 235)

Name: NF14937_low_12
Description: NF14937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14937_low_12
NF14937_low_12
[»] chr5 (2 HSPs)
chr5 (1-220)||(454458-454677)
chr5 (84-210)||(470066-470192)
[»] chr1 (5 HSPs)
chr1 (22-159)||(47698389-47698526)
chr1 (86-164)||(47574620-47574698)
chr1 (86-162)||(47584322-47584398)
chr1 (86-173)||(47607319-47607406)
chr1 (82-159)||(47636542-47636619)
[»] scaffold0007 (1 HSPs)
scaffold0007 (86-204)||(7122-7240)
[»] chr6 (9 HSPs)
chr6 (91-173)||(20233232-20233314)
chr6 (91-173)||(22127216-22127298)
chr6 (134-204)||(20236134-20236204)
chr6 (134-204)||(22130118-22130188)
chr6 (85-210)||(21968258-21968383)
chr6 (86-173)||(18991041-18991128)
chr6 (86-173)||(22206832-22206919)
chr6 (134-204)||(18995812-18995882)
chr6 (85-173)||(22086142-22086230)
[»] chr3 (3 HSPs)
chr3 (80-164)||(1077344-1077428)
chr3 (80-164)||(1050441-1050525)
chr3 (80-164)||(1091184-1091268)
[»] chr8 (1 HSPs)
chr8 (91-173)||(10401677-10401759)
[»] chr7 (6 HSPs)
chr7 (86-131)||(20231542-20231587)
chr7 (86-116)||(20264016-20264046)
chr7 (86-116)||(20279525-20279555)
chr7 (87-116)||(20284955-20284984)
chr7 (86-114)||(19939123-19939151)
chr7 (86-114)||(19970262-19970290)
[»] chr4 (2 HSPs)
chr4 (86-116)||(40823855-40823885)
chr4 (83-159)||(36290572-36290648)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 454458 - 454677
Alignment:
Q  1 tatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatttttgccataccaaagtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454458 tatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatttttgccataccaaagtct 454557  T
Q  101 gatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454558 gatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatcc 454657  T
Q  201 ctcgtgcaataccacctatg 220  Q
    ||||||||||||||||||||    
T  454658 ctcgtgcaataccacctatg 454677  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 470066 - 470192
Alignment:
Q  84 ttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatc 183  Q
    |||||| |||||| |||||||||||||||||||| || | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |  ||    
T  470066 ttgccaaaccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactc 470165  T
Q  184 atgtaagtaatgaatccctcgtgcaat 210  Q
    |||||||||| |||| |||||||||||    
T  470166 atgtaagtaaagaattcctcgtgcaat 470192  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 47698526 - 47698389
Alignment:
Q  22 tacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatttttgccataccaaagtctgatatttttggattcatattc 121  Q
    ||||||||| |||||| ||||||| || ||| ||||| ||| || ||||| | | | |||| ||||||| || || || |||||||| |||||||| ||     
T  47698526 tacttactatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcatgtta 47698427  T
Q  122 ttatctaacaatatattgctaggtttgagatcacgatg 159  Q
    | ||||||||||| ||| ||||||||||||||||||||    
T  47698426 tcatctaacaatacattactaggtttgagatcacgatg 47698389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 47574698 - 47574620
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 164  Q
    ||||| ||||| |||||||||||||||||||||||   ||||||||  | || ||||||||| ||||||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatga 47574620  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 47584398 - 47584322
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 162  Q
    ||||| ||||| |||||||||||||| ||||| ||  ||||||| || | |||||||||||| ||||||||||||||    
T  47584398 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 47584322  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 47607406 - 47607319
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    ||||| ||||| ||||| ||||| ||||||||||  | |||||| || ||||| |||||||| |||||||||||||| ||||| ||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtc 47607319  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 47636619 - 47636542
Alignment:
Q  82 ttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 159  Q
    ||||||||| |||||||| || ||||||||||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  47636619 ttttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 47636542  T

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Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 7240 - 7122
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcat 185  Q
    |||| |||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| ||||| |||| ||| |||||||    
T  7240 gccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgtgaatgatcat 7141  T
Q  186 gtaagtaatgaatccctcg 204  Q
    | || ||| ||||||||||    
T  7140 gcaaataaagaatccctcg 7122  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 20233314 - 20233232
Alignment:
Q  91 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    |||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  20233314 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 20233232  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 22127298 - 22127216
Alignment:
Q  91 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    |||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  22127298 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 22127216  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 20236134 - 20236204
Alignment:
Q  134 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 204  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  20236134 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 20236204  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 22130118 - 22130188
Alignment:
Q  134 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 204  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  22130118 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 22130188  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 21968258 - 21968383
Alignment:
Q  85 tgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatca 184  Q
    ||||| |||||| ||||| ||||| ||| ||||||| | |||||| |  ||||| |||||||||||||| |||||||| ||||| ||||  || || |||    
T  21968258 tgccaaaccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctca 21968357  T
Q  185 tgtaagtaatgaatccctcgtgcaat 210  Q
    || || ||| |||| ||||| |||||    
T  21968358 tgcaaataaagaattcctcgagcaat 21968383  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 18991041 - 18991128
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    |||| |||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| ||||| ||||    
T  18991041 gccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtc 18991128  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 22206919 - 22206832
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    |||| |||||| || || ||||| ||| ||||||| | |||||| |  |||||||||||||||||||| |||||||| ||||| ||||    
T  22206919 gccaaaccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttgagtc 22206832  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 18995812 - 18995882
Alignment:
Q  134 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 204  Q
    |||||||||||||||||||| |||||||| ||||| ||||  || || ||||| || ||| ||||||||||    
T  18995812 atattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaatccctcg 18995882  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 22086142 - 22086230
Alignment:
Q  85 tgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    ||||| |||||| ||||| ||| | ||| ||||||| | |||||| |  ||||| || |||||||||||||||||||| ||||| ||||    
T  22086142 tgccaaaccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtc 22086230  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 1077428 - 1077344
Alignment:
Q  80 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 164  Q
    ||||||||||  ||||| ||||||||||||||||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1077428 atttttgccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1077344  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 1050525 - 1050441
Alignment:
Q  80 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 164  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1050525 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1050441  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 1091268 - 1091184
Alignment:
Q  80 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 164  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1091268 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1091184  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 10401677 - 10401759
Alignment:
Q  91 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 173  Q
    |||||| ||||||||||||||| ||||||| | |||||| || ||||| ||||||||||| ||||| || || ||||| ||||    
T  10401677 accaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataactttgagtc 10401759  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 20231587 - 20231542
Alignment:
Q  86 gccataccaaagtctgatatttttggattcatattcttatctaaca 131  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||    
T  20231587 gccataccaaagtctgatatttttggattcaacttctcatctaaca 20231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 20264046 - 20264016
Alignment:
Q  86 gccataccaaagtctgatatttttggattca 116  Q
    |||||||||||||||||||||||||||||||    
T  20264046 gccataccaaagtctgatatttttggattca 20264016  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 20279555 - 20279525
Alignment:
Q  86 gccataccaaagtctgatatttttggattca 116  Q
    |||||||||||||||||||||||||||||||    
T  20279555 gccataccaaagtctgatatttttggattca 20279525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 20284984 - 20284955
Alignment:
Q  87 ccataccaaagtctgatatttttggattca 116  Q
    ||||||||||||||||||||||||||||||    
T  20284984 ccataccaaagtctgatatttttggattca 20284955  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 19939151 - 19939123
Alignment:
Q  86 gccataccaaagtctgatatttttggatt 114  Q
    |||||||||||||||||||||||||||||    
T  19939151 gccataccaaagtctgatatttttggatt 19939123  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 19970290 - 19970262
Alignment:
Q  86 gccataccaaagtctgatatttttggatt 114  Q
    |||||||||||||||||||||||||||||    
T  19970290 gccataccaaagtctgatatttttggatt 19970262  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 40823855 - 40823885
Alignment:
Q  86 gccataccaaagtctgatatttttggattca 116  Q
    |||||||||||||||||||||||||||||||    
T  40823855 gccataccaaagtctgatatttttggattca 40823885  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 36290648 - 36290572
Alignment:
Q  83 tttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 159  Q
    |||||||  ||||||||||| ||||||||||||||||| | ||| ||||| || ||||| | ||| ||||| |||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatg 36290572  T

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