View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14937_low_3 (Length: 448)
Name: NF14937_low_3
Description: NF14937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14937_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 41918437 - 41918856
Alignment:
| Q |
13 |
aaaatcattacagagaatgtgttatttcaggtgatgttaaatatttcaacacctttattttatatttttt-ctgaatacatctattttgtttggtttctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41918437 |
aaaatcattacagagaatgtgttatttcaggtgatgttaaatatttcaacacctttattttatatttttttcttaatacatctattttgtttggtttctt |
41918536 |
T |
|
| Q |
112 |
atgttccatgttggaaaaagggttgaaatggcatattcgtaaacctataaaatatatattttgcggacagcctgtcacgaaaagttgtgaacgaaactga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918537 |
atgttccatgttggaaaaagggttgaaatggcatattcgtaaacctataaaatatatattttgcggacagcctgtcacgaaaagttgtgaacgaaactga |
41918636 |
T |
|
| Q |
212 |
tgatagatgactaaccatgaggcccatgatatgatataaaataataatggttttcacgtaccatattatattaccctggctaattattcatttatagcat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918637 |
tgatagatgactaaccatgaggcccatgatatgatataaaataataatggttttcacgtaccatattatattaccctggctaattattcatttatagcat |
41918736 |
T |
|
| Q |
312 |
aatatggtttggctgtgtaattttgtggccgaaaagtttgatcaacactttaccacttcttagtgtggaaacagataattatatttagaggaaaagacat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41918737 |
aatatggtttggctgtgtaattttgtggccgaaaagtttgatcaacactttaccacttcttagtgtggaaacagataattatattcagaggaaaagacat |
41918836 |
T |
|
| Q |
412 |
ggttatgacgcacggatgta |
431 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
41918837 |
ggttatgaagcacggatgta |
41918856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University