View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14938_high_10 (Length: 264)
Name: NF14938_high_10
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 46467261 - 46467019
Alignment:
| Q |
1 |
gatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccatgattaggagtc |
100 |
Q |
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| T |
46467261 |
gatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccatgattaggagtc |
46467162 |
T |
|
| Q |
101 |
aaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagtttcacattgt |
200 |
Q |
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| T |
46467161 |
aaaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagtttcacattgt |
46467062 |
T |
|
| Q |
201 |
tatcactatgagaaatcaacaacttacaataagcactagcagc |
243 |
Q |
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| T |
46467061 |
tatcactatgagaaatcaacaacttacaataagcactagcagc |
46467019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 1472089 - 1471943
Alignment:
| Q |
87 |
catgattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaat |
186 |
Q |
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| T |
1472089 |
catgattaggagtcgataacgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaagccgatcaagcacaat |
1471990 |
T |
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| Q |
187 |
aagtttcacattgttatcactatgagaaatcaacaacttacaataag |
233 |
Q |
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| T |
1471989 |
aagcttcacattgttatcactctgagaaagcaataactgacaataag |
1471943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 55202673 - 55202717
Alignment:
| Q |
107 |
gccctaagcacgtccataaccatatcaaccataatctccctatta |
151 |
Q |
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| T |
55202673 |
gccctaagcacatccataaccatatcaaccataatttccctatta |
55202717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 187202 - 187268
Alignment:
| Q |
8 |
tgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
74 |
Q |
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||||||||| |||||| ||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
187202 |
tgagaaaattgcaatgcacgtttgagagggagaaagagtttttgactgtaagttgcaagtcaaggtg |
187268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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