View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14938_high_11 (Length: 246)
Name: NF14938_high_11
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_high_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 565208 - 564964
Alignment:
| Q |
2 |
aaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagttggagtagtatcttctctatcaaagattacaataataagagaaagacaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
565208 |
aaaggcatgcaagaagaagaaactctcataggtaaattttcttttaatagctggagtagtatcttctctatcaaagattacaataataagagaaagacaa |
565109 |
T |
|
| Q |
102 |
agaggacaaaattcttgaaaagatcaagagtgaatcatggatccaattaaggattcttaaatcgctcacaacaaaaattaatggtattgtatattatata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
565108 |
agaggacaaaattcttgaaaagatcaagagtgaatcgtggatccaattaaggattcttaaatcgctcacaacaagaattaatggtattgtatattatata |
565009 |
T |
|
| Q |
202 |
ctatcaaggagtgtaaattactcttgtttacactatcatatgtac |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
565008 |
ctatcatggagtgtaaattactcttgtttacactatcatatgtac |
564964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University