View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14938_high_5 (Length: 420)

Name: NF14938_high_5
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14938_high_5
NF14938_high_5
[»] chr6 (15 HSPs)
chr6 (1-409)||(3219002-3219410)
chr6 (140-256)||(7164700-7164812)
chr6 (139-181)||(5641666-5641708)
chr6 (139-261)||(17216958-17217077)
chr6 (139-261)||(6228236-6228355)
chr6 (152-243)||(9455858-9455945)
chr6 (139-176)||(29321952-29321989)
chr6 (139-252)||(1128392-1128505)
chr6 (229-267)||(3338369-3338407)
chr6 (139-181)||(5757847-5757889)
chr6 (139-181)||(18903343-18903385)
chr6 (201-239)||(31705924-31705962)
chr6 (139-181)||(34884133-34884175)
chr6 (152-181)||(8330480-8330509)
chr6 (139-175)||(19221783-19221819)
[»] chr2 (19 HSPs)
chr2 (139-262)||(24202149-24202269)
chr2 (139-252)||(12183711-12183821)
chr2 (139-262)||(36755621-36755741)
chr2 (139-178)||(37592198-37592237)
chr2 (139-252)||(42541165-42541274)
chr2 (139-181)||(43027232-43027274)
chr2 (139-261)||(33065233-33065352)
chr2 (142-189)||(38790074-38790121)
chr2 (139-178)||(42998715-42998754)
chr2 (139-242)||(41749966-41750065)
chr2 (201-261)||(18949719-18949779)
chr2 (142-181)||(37886204-37886243)
chr2 (139-181)||(5207169-5207211)
chr2 (139-181)||(29090492-29090534)
chr2 (139-181)||(34107571-34107613)
chr2 (139-181)||(41541516-41541558)
chr2 (139-175)||(18949661-18949697)
chr2 (201-261)||(32084845-32084905)
chr2 (142-194)||(45201658-45201710)
[»] chr7 (27 HSPs)
chr7 (149-263)||(44662449-44662560)
chr7 (139-256)||(46195923-46196037)
chr7 (139-243)||(13295351-13295452)
chr7 (139-261)||(24029985-24030103)
chr7 (201-263)||(9992608-9992670)
chr7 (139-261)||(5228071-5228189)
chr7 (139-256)||(6548688-6548801)
chr7 (139-261)||(14707293-14707411)
chr7 (139-262)||(29357800-29357919)
chr7 (201-262)||(46570006-46570067)
chr7 (202-261)||(8249705-8249764)
chr7 (139-252)||(10624774-10624882)
chr7 (139-174)||(33342795-33342830)
chr7 (196-267)||(42435222-42435292)
chr7 (139-181)||(23602351-23602393)
chr7 (139-181)||(26606085-26606127)
chr7 (201-267)||(38151342-38151407)
chr7 (142-263)||(46243289-46243407)
chr7 (140-181)||(15025233-15025274)
chr7 (140-181)||(26455982-26456023)
chr7 (139-261)||(31793468-31793587)
chr7 (139-261)||(48433686-48433805)
chr7 (139-181)||(4956068-4956110)
chr7 (139-181)||(32376516-32376558)
chr7 (139-175)||(37563227-37563263)
chr7 (156-188)||(38110176-38110208)
chr7 (145-181)||(43440766-43440802)
[»] chr1 (29 HSPs)
chr1 (139-256)||(19424051-19424165)
chr1 (139-261)||(24253619-24253738)
chr1 (139-261)||(46532471-46532590)
chr1 (139-254)||(8310661-8310772)
chr1 (139-265)||(35195587-35195710)
chr1 (139-181)||(29332361-29332403)
chr1 (139-242)||(25299878-25299978)
chr1 (139-261)||(7438621-7438740)
chr1 (140-262)||(22779222-22779341)
chr1 (140-261)||(40209892-40210010)
chr1 (202-261)||(44583588-44583646)
chr1 (142-262)||(17916706-17916819)
chr1 (139-177)||(22386224-22386262)
chr1 (139-181)||(41618736-41618778)
chr1 (139-222)||(10123029-10123109)
chr1 (154-261)||(14262712-14262816)
chr1 (142-181)||(50302830-50302869)
chr1 (139-181)||(2350351-2350393)
chr1 (203-261)||(2846719-2846776)
chr1 (139-181)||(4126976-4127018)
chr1 (139-181)||(27054773-27054815)
chr1 (139-181)||(42946443-42946485)
chr1 (139-181)||(43109214-43109256)
chr1 (229-262)||(1862902-1862935)
chr1 (139-175)||(2017661-2017697)
chr1 (199-238)||(5680734-5680774)
chr1 (203-243)||(41160861-41160901)
chr1 (142-178)||(42851530-42851566)
chr1 (153-181)||(44583664-44583692)
[»] chr4 (26 HSPs)
chr4 (139-248)||(2766734-2766840)
chr4 (142-261)||(38690666-38690782)
chr4 (139-261)||(37574273-37574391)
chr4 (139-189)||(2824661-2824711)
chr4 (139-264)||(49811384-49811505)
chr4 (139-242)||(56555568-56555667)
chr4 (139-261)||(16556451-16556570)
chr4 (139-256)||(11491195-11491309)
chr4 (142-263)||(29889757-29889875)
chr4 (139-243)||(45355694-45355794)
chr4 (139-243)||(45369435-45369535)
chr4 (142-181)||(49607627-49607666)
chr4 (140-254)||(25234835-25234946)
chr4 (141-181)||(35733451-35733491)
chr4 (139-261)||(48404113-48404232)
chr4 (142-178)||(49607956-49607992)
chr4 (142-181)||(2931141-2931180)
chr4 (203-262)||(53758974-53759032)
chr4 (142-176)||(21200611-21200645)
chr4 (139-181)||(35305059-35305101)
chr4 (139-181)||(46283199-46283241)
chr4 (203-256)||(33993656-33993709)
chr4 (140-181)||(37889583-37889624)
chr4 (139-176)||(42154648-42154685)
chr4 (196-241)||(42381115-42381160)
chr4 (201-261)||(43362203-43362263)
[»] chr3 (36 HSPs)
chr3 (158-262)||(9489476-9489577)
chr3 (139-262)||(166787-166907)
chr3 (140-259)||(48717415-48717531)
chr3 (139-261)||(50271730-50271848)
chr3 (139-256)||(1102672-1102786)
chr3 (203-261)||(11661201-11661259)
chr3 (139-243)||(31435477-31435578)
chr3 (139-254)||(27394515-27394626)
chr3 (142-261)||(45431627-45431743)
chr3 (139-261)||(50676843-50676962)
chr3 (142-255)||(37756392-37756502)
chr3 (139-181)||(54457230-54457272)
chr3 (139-189)||(54964517-54964567)
chr3 (140-181)||(50332935-50332976)
chr3 (139-261)||(32421348-32421467)
chr3 (139-261)||(33528181-33528300)
chr3 (139-256)||(47864641-47864755)
chr3 (139-181)||(8930953-8930995)
chr3 (139-181)||(29645803-29645845)
chr3 (139-181)||(38414960-38415002)
chr3 (139-181)||(38668205-38668247)
chr3 (139-181)||(39739351-39739393)
chr3 (150-261)||(49429461-49429568)
chr3 (139-261)||(43897602-43897721)
chr3 (139-252)||(27471513-27471623)
chr3 (201-252)||(38869226-38869277)
chr3 (150-181)||(41768450-41768481)
chr3 (139-181)||(9738433-9738475)
chr3 (139-181)||(11483690-11483732)
chr3 (139-181)||(22602179-22602221)
chr3 (139-181)||(24651201-24651243)
chr3 (139-181)||(40415538-40415580)
chr3 (139-181)||(44062018-44062060)
chr3 (229-262)||(30745232-30745265)
chr3 (139-176)||(55426192-55426229)
chr3 (139-175)||(36590478-36590514)
[»] chr8 (24 HSPs)
chr8 (140-261)||(10621352-10621470)
chr8 (139-246)||(30659968-30660072)
chr8 (142-256)||(19957300-19957411)
chr8 (139-256)||(38289211-38289325)
chr8 (203-256)||(19733106-19733159)
chr8 (139-261)||(39104607-39104725)
chr8 (145-181)||(3956727-3956763)
chr8 (201-261)||(10201262-10201322)
chr8 (139-187)||(41375558-41375606)
chr8 (201-256)||(43456687-43456742)
chr8 (139-181)||(4259936-4259978)
chr8 (139-181)||(8145850-8145892)
chr8 (196-262)||(11810569-11810635)
chr8 (202-240)||(35790877-35790915)
chr8 (139-181)||(43413862-43413904)
chr8 (201-255)||(43508483-43508537)
chr8 (142-175)||(279976-280009)
chr8 (142-175)||(635843-635876)
chr8 (142-175)||(821646-821679)
chr8 (201-262)||(11289430-11289490)
chr8 (221-262)||(31220343-31220384)
chr8 (201-261)||(22652683-22652743)
chr8 (141-189)||(27102310-27102358)
chr8 (140-188)||(31220412-31220460)
[»] chr5 (20 HSPs)
chr5 (139-263)||(20191440-20191560)
chr5 (203-261)||(31991798-31991856)
chr5 (139-252)||(34729481-34729590)
chr5 (141-181)||(12256474-12256514)
chr5 (139-261)||(38503233-38503352)
chr5 (139-181)||(15680877-15680919)
chr5 (203-262)||(12256524-12256583)
chr5 (139-181)||(3294160-3294202)
chr5 (139-181)||(5039757-5039799)
chr5 (139-181)||(15470597-15470639)
chr5 (139-181)||(33545363-33545405)
chr5 (140-181)||(1572187-1572228)
chr5 (202-267)||(13547442-13547506)
chr5 (204-261)||(15696207-15696264)
chr5 (196-237)||(16644502-16644543)
chr5 (140-172)||(26671669-26671701)
chr5 (140-172)||(26943266-26943298)
chr5 (196-224)||(27278784-27278812)
chr5 (201-257)||(31154153-31154209)
chr5 (201-261)||(31154281-31154341)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-261)||(419712-419831)
[»] scaffold0087 (1 HSPs)
scaffold0087 (139-175)||(44331-44367)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 3219002 - 3219410
Alignment:
Q  1 atagagaatttatctgtctgacaccatttaagttcataaaacctagtagatttgagaatcatgatagcttaannnnnnnnnnnngcaagtggcaaaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  3219002 atagagaatttatctgtctgacaccatttaagttcataaaacctagtagatttgagaatcatgatagcttaattttttatttttgcaagtggcaaaagaa 3219101  T
Q  101 cttggttaaggttttaatggaataattcgannnnnnnn--gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactct 198  Q
    |||||||||||||||||||||||||||| |          |||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||     
T  3219102 cttggttaaggttttaatggaataattcaatttttttttggtcaagtagtttagcggcgggagaaattcatcttaaaggtgaaatagtgggctaaactcc 3219201  T
Q  199 gaggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcacatggatatggaataattcgatttagtcaagctcaaa 298  Q
    |||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  3219202 gaggttcggaccc-gacccctacatacataatgcattatccctaaccaagtgagctaaactcacaggaacatggaataattcgatttagtcaagctcaaa 3219300  T
Q  299 atgatttctaaaatatatacactatttatccataaatattttgttaacattggccactaatgttaacacaaaaattttaacttaattaattttctattag 398  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219301 attatttctaaaatatatacactattt-tccataaatattttgttaacattggccactaatgttaacacaaaaattttaacttaattaattttctattag 3219399  T
Q  399 ttgaatgtgat 409  Q
    |||||||||||    
T  3219400 ttgaatgtgat 3219410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 7164812 - 7164700
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |   |   | ||||||||| ||| |||||||||| | ||||||||||||    
T  7164812 tcaagtagtctagcggctagagaaattcaccttaaaggtgaataagtggggtggtc---ggggttcgaactccggcccctacatata-aatgcattatcc 7164717  T
Q  240 cttatcaagtgagctaa 256  Q
    |||||||| ||||||||    
T  7164716 cttatcaaatgagctaa 7164700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 5641666 - 5641708
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5641666 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 5641708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 17217077 - 17216958
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || |  |||||||| |||||||||||| | || ||||||||||    
T  17217077 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtg---tccggagttcgaactccgacccctacacatattatgcattatc 17216981  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  17216980 ccttaccaaatgagctaagctca 17216958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 6228236 - 6228355
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || | ||||||||||||| ||||| || | ||  |||||||||    
T  6228236 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtccggggttcgaaccccggcccctgcacatattgtgcattatc 6228332  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  6228333 ccttaccaaatgagctaagctca 6228355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 9455945 - 9455858
Alignment:
Q  152 gcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccctta 243  Q
    ||||||||| ||||||| ||||||||||||  |||||| |    | || ||||||||| |||||||||||||||| ||||||||||||||||    
T  9455945 gcggctagaaaaattcaacttaaaggtgaataagtggggtg---tttggggttcgaactccgacccctacataca-aatgcattatccctta 9455858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 29321952 - 29321989
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaag 176  Q
    |||||||||||||| |||||||||||||||||||||||    
T  29321952 gtcaagtagtctagtggctagagaaattcaccttaaag 29321989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 1128392 - 1128505
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtga--aat-agtgggctaaactctgaggttcgaaccccgacccctacatacataatgcatt 235  Q
    |||||||||||||| | ||||||||||||||||||||| |||  ||| | |||| |    |||| |||||||||||| |||||| || | || |||||||    
T  1128392 gtcaagtagtctagtgactagagaaattcaccttaaagatgatgaataaatggggt---gtctggggttcgaaccccaacccctgcacatattatgcatt 1128488  T
Q  236 atcccttatcaagtgag 252  Q
    |||||||||||| ||||    
T  1128489 atcccttatcaaatgag 1128505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 3338369 - 3338407
Alignment:
Q  229 atgcattatcccttatcaagtgagctaaactcacatgga 267  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  3338369 atgcattatctcttaccaagtgagctaaactcacatgga 3338407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 5757847 - 5757889
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  5757847 gtcaagtagcctggcggctagagaaattcaccttaaatgtgaa 5757889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 18903343 - 18903385
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  18903343 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 18903385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 31705962 - 31705924
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  31705962 ggttcgaaccccgacccctacatatataatgcaatatcc 31705924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 34884133 - 34884175
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  34884133 gtcaagtagtctagcggctagataaatttaccttaatggtgaa 34884175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 8330480 - 8330509
Alignment:
Q  152 gcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||||||||||||||||||||    
T  8330480 gcggctagagaaattcaccttaaaggtgaa 8330509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 19221819 - 19221783
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19221819 gtcaagtaatctagtggctagagaaattcaccttaaa 19221783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 24202269 - 24202149
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||| |    || | ||||||||||||| ||||| ||||||||||||||||||    
T  24202269 gtcaagcagcctagcggctggagaaattcaccttaaaggtgaaatagtggggtg---tccggggttcgaaccccggcccctgcatacataatgcattatc 24202173  T
Q  239 ccttatcaagtgagctaaactcac 262  Q
    ||||| |||||||||||| |||||    
T  24202172 ccttaccaagtgagctaagctcac 24202149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 12183711 - 12183821
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||||||||    |||||||||||||||||||| |||||||||| |    ||||  ||||||| |||||||||| |||||||||||||||||     
T  12183711 gtcaagtagtctagcgatcggagaaattcaccttaaaggtaaaatagtgggatg---tctggagttcgaatcccgacccctgcatacataatgcattatt 12183807  T
Q  239 ccttatcaagtgag 252  Q
    ||||| ||||||||    
T  12183808 ccttaccaagtgag 12183821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 36755741 - 36755621
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||| |  |||||| ||||||||||||||||||||| || |    || | ||||| |||||||||||||| ||| ||||| |||||||    
T  36755741 gtcaagtagcctagcgaccggagaaagtcaccttaaaggtgaaatagttgggtg---tccggggttcaaaccccgacccctatatatataatccattatc 36755645  T
Q  239 ccttatcaagtgagctaaactcac 262  Q
    ||||| |||||||| ||| |||||    
T  36755644 ccttaccaagtgagttaagctcac 36755621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 37592198 - 37592237
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggt 178  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37592198 gtcaagtagtctagcggctagagaaattcaccttaaaggt 37592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 42541274 - 42541165
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||||||||||||||||||||||||||||   |||||| |    |||| ||||||||||||  ||||| |||| || || |||||||    
T  42541274 gtcaagtagcctagcggctagagaaattcaccttaaaggtgagtaagtggggt---gtctggggttcgaaccccagcccctgcataaat-atccattatc 42541179  T
Q  239 ccttatcaagtgag 252  Q
    ||||| ||||||||    
T  42541178 ccttaccaagtgag 42541165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 43027274 - 43027232
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  43027274 gtcaagtagtctagtggctagagaaattcaccttaaaggtgaa 43027232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 33065233 - 33065352
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||| || |    || ||| |||||||||||||||||||| ||||  |||||||||    
T  33065233 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtagggtgt--tcggag-ttcgaaccccgacccctacacacattgtgcattatc 33065329  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||  ||| |||||||| ||||    
T  33065330 ccttgccaaatgagctaagctca 33065352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 38790074 - 38790121
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtggg 189  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  38790074 aagtagtctagcggccggagaaattcatcttaaaggtgaaatagtggg 38790121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 42998754 - 42998715
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggt 178  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  42998754 gtcaagtagcctagcggctagagaaattcaccttaaaggt 42998715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 41750065 - 41749966
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||      || | ||||| |||||||||||||||| ||||  |||||||||    
T  41750065 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggg----tgtccggggttcaaaccccgacccctacacacattgtgcattatc 41749970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 18949719 - 18949779
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||||||||||||||| || | |||||||||||||| ||||||| |||| ||| ||||    
T  18949719 ggttcgaaccccgacccctgcacatataatgcattatccgttatcaaatgagttaagctca 18949779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 37886204 - 37886243
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  37886204 aagtagtctaacggttagagaaattcaccttaaaggtgaa 37886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 5207211 - 5207169
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||    
T  5207211 gtcaagtagtctagtggctaaagaaattcatcttaaaggtgaa 5207169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 29090534 - 29090492
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||    
T  29090534 gtcaagtagcctagcggctggagaaattcaccttaaagatgaa 29090492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 34107613 - 34107571
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  34107613 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 34107571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 41541516 - 41541558
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  41541516 gtcaagtagcctagcggccagagaaattcaccttaaaagtgaa 41541558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 18949661 - 18949697
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    |||||||||||||| |||||||||||||||| |||||    
T  18949661 gtcaagtagtctagtggctagagaaattcacattaaa 18949697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 32084905 - 32084845
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||||||||| |||||||||| |  ||||||| ||||||| ||| |||||||| ||||    
T  32084905 ggttcgaaccccggcccctacatataatatgcattgtcccttaccaaatgagctaagctca 32084845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 45201710 - 45201658
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaa 194  Q
    |||||||||||| |||||| |||||||||||||| |||||  |||| ||||||    
T  45201710 aagtagtctagcagctagaaaaattcaccttaaaagtgaataagtgagctaaa 45201658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 44662449 - 44662560
Alignment:
Q  149 ctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaag 248  Q
    ||||||||| ||||||||||||||||||||||||||||||| |    || | ||||||||||||| ||||| ||||||||||||||||||||||| | ||    
T  44662449 ctagcggctggagaaattcaccttaaaggtgaaatagtggggtg---tccggggttcgaaccccggcccctgcatacataatgcattatcccttacctag 44662545  T
Q  249 tgagctaaactcaca 263  Q
    |||||||| ||||||    
T  44662546 tgagctaagctcaca 44662560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 46196037 - 46195923
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||| |    || | ||||| ||||||||||||| |||||||||| |||||||    
T  46196037 gtcaagcagactagcggctggagaaattcaccttaaaggtgaaatagtggggtg---tccggggttcaaaccccgacccctgcatacataatacattatc 46195941  T
Q  239 ccttatcaagtgagctaa 256  Q
    ||||||||||| ||||||    
T  46195940 ccttatcaagtaagctaa 46195923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 13295351 - 13295452
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| || | ||   || |||||||||||||||||||||||||||||||| |||||||    
T  13295351 gtcaagtagcctagcggctggagaaattcaccttaaaggtgaaataatgagata---tccgaggttcgaaccccgacccctacatacataatacattatc 13295447  T
Q  239 cctta 243  Q
     ||||    
T  13295448 tctta 13295452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 24030103 - 24029985
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  | |||| |    |||| ||||||||||||| |||||||| | ||  |||||||||    
T  24030103 gtcaagtagtctag-ggctagagaaattcaccttaaagatgaataaatggggtg---tctggggttcgaaccccggcccctacacatattgtgcattatc 24030008  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||||||| |||||||||||||    
T  24030007 ccttatcaaatgagctaaactca 24029985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 9992670 - 9992608
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcaca 263  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||||||    
T  9992670 ggttcgaaccccgatctctacatacataatgcattatcccttatcaaatgagctaagctcaca 9992608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 5228189 - 5228071
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||| |    ||   | ||||||||||| ||||| |||| | |||||||||||    
T  5228189 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggt---gtccaggattcgaaccccggcccctgcata-aaaatgcattatc 5228094  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    | |||||||||||||||| ||||    
T  5228093 ctttatcaagtgagctaagctca 5228071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 6548688 - 6548801
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||||||| |    || |  ||||||||||||  |||| |||||||||||||||||     
T  6548688 gtcaagtagcctagcggccggagaaattcaccttaaaggtgaaatagtggggt---gtccggagttcgaaccccg-gccctgcatacataatgcattatt 6548783  T
Q  239 ccttatcaagtgagctaa 256  Q
    |||||  |||||||||||    
T  6548784 ccttactaagtgagctaa 6548801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 14707411 - 14707293
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||||| |||||||||||||||||  ||||||||||  |||||| |    || | |||||||||||| |||||| |||| | |||||||||||    
T  14707411 gtcaagtagtctaacggctagagaaattcactataaaggtgaataagtggggt---gtccggggttcgaaccccaacccctgcatata-aatgcattatc 14707316  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  14707315 ccttaccaaatgagctaagctca 14707293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 29357919 - 29357800
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||| ||| ||||||||   |||||||||||||||||||||||||||||  |    ||   ||||||||| ||| ||| | |||| |||||||||||||    
T  29357919 gtcaattagcctagcggccgaagaaattcaccttaaaggtgaaatagtggagtg---tccagggttcgaactccggccc-tgcatatataatgcattatc 29357824  T
Q  239 ccttatcaagtgagctaaactcac 262  Q
    |||||||||||||||||| |||||    
T  29357823 ccttatcaagtgagctaagctcac 29357800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 46570006 - 46570067
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||| |||||    
T  46570006 ggttcgaaccccggcccctgcataaactatgcattatcccttatcaagtgagctaagctcac 46570067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 8249764 - 8249705
Alignment:
Q  202 gttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    |||||||||||||||||| |||| || ||||||||||| ||| |||||||||||| ||||    
T  8249764 gttcgaaccccgacccctgcatatattatgcattatcctttaccaagtgagctaagctca 8249705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 10624774 - 10624882
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  |||| | |    | || ||||||||||| ||||||| ||| || |||||||||||    
T  10624774 gtcaagtagtcaagcggctagagaaattcaccttaaa-gtgaataagtgcggt---gtttggggttcgaaccctgacccctgcatgca-aatgcattatc 10624868  T
Q  239 ccttatcaagtgag 252  Q
    ||||||||| ||||    
T  10624869 ccttatcaaatgag 10624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 33342795 - 33342830
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaa 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  33342795 gtcaagtagtctagcggctagagaaattcaccttaa 33342830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 42435222 - 42435292
Alignment:
Q  196 tctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcacatgga 267  Q
    |||| ||||||||||||| ||||| |||| || ||| ||| |||||| ||||||||||||||||||||||||    
T  42435222 tctggggttcgaaccccggcccctgcataaattatgtattgtccctt-tcaagtgagctaaactcacatgga 42435292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 23602393 - 23602351
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||| ||||||||||||||||||||||    
T  23602393 gtcaagtagtctagtggctaaagaaattcaccttaaaggtgaa 23602351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 26606085 - 26606127
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  26606085 gtcaagtagccaagcggctagagaaattcaccttaaaggtgaa 26606127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 38151407 - 38151342
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcacatgga 267  Q
    ||||||||||||||||||| |||| |||||||| |||||| || ||| |||||||| ||||||||||    
T  38151407 ggttcgaaccccgacccctgcataaataatgcaatatccc-taccaactgagctaagctcacatgga 38151342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 46243407 - 46243289
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    ||||| |||||||| |||||||||||||||||||||||||  |||||| |    || || |||||||| |||| ||||| ||| |  |||||||||||||    
T  46243407 aagtattctagcggttagagaaattcaccttaaaggtgaataagtggggt--gttcgga-gttcgaactccgatccctatatataatatgcattatccct 46243311  T
Q  242 tatcaagtgagctaaactcaca 263  Q
    || ||| |||||||| ||||||    
T  46243310 taccaaatgagctaagctcaca 46243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 15025274 - 15025233
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  15025274 tcaagtagcctagcgggtagagaaattcaccttaaaggtgaa 15025233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 26455982 - 26456023
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  26455982 tcaagtagtctagtggctagagaaattcacctttaaggtgaa 26456023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 31793587 - 31793468
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||  |||| |||||||||||| |||||||||| ||||  |||||| |    || | ||||||||||||||||||| || | ||  |||||||||    
T  31793587 gtcaagtaacctagtggctagagaaatccaccttaaagatgaataagtggggtg---tccggggttcgaaccccgacccctgcacatattgtgcattatc 31793491  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  31793490 ccttaacaaatgagctaagctca 31793468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 48433686 - 48433805
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || | |||| |||||||| ||||| || | ||  |||||||||    
T  48433686 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtccggggtttgaaccccggcccctgcacatattgtgcattatc 48433782  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  48433783 ccttaccaaatgagctaagctca 48433805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 4956068 - 4956110
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  4956068 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 4956110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 32376558 - 32376516
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||    
T  32376558 gtcaagtagtttagcggctaaagaaattcaccttaaagttgaa 32376516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 37563227 - 37563263
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  37563227 gtcaagtagtctagcggttagagaaattcatcttaaa 37563263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 38110176 - 38110208
Alignment:
Q  156 ctagagaaattcaccttaaaggtgaaatagtgg 188  Q
    ||||||||||||| |||||||||||||||||||    
T  38110176 ctagagaaattcatcttaaaggtgaaatagtgg 38110208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 43440802 - 43440766
Alignment:
Q  145 tagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  43440802 tagtctagtggctagagaaattcaccttaaagatgaa 43440766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 19424165 - 19424051
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||| |    || | ||||||||||||||||||| |||| |  ||||||||||    
T  19424165 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggt---gtccggggttcgaaccccgacccctgcatataatatgcattatc 19424069  T
Q  239 ccttatcaagtgagctaa 256  Q
    ||||||||| ||||||||    
T  19424068 ccttatcaaatgagctaa 19424051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 24253619 - 24253738
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||||| ||| |||||||||||| |||||||| |||  |||  | |    ||||||||||||| |||||||||| |||| || ||||||||||    
T  24253619 gtcaagtagtctaacggttagagaaattcatcttaaaggcgaataagtaagatg---tctgaggttcgaatcccgacccctgcataaattatgcattatc 24253715  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    |||||||||||||||||| ||||    
T  24253716 ccttatcaagtgagctaagctca 24253738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 46532471 - 46532590
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||| |    ||||| ||||||| |||| ||||  |||||||||| ||||||     
T  46532471 gtcaagtagcttagcggttagagaaattcaccttaaaggtgaaatagtggggt---gtctgaagttcgaatcccggccccagcatacataatacattatt 46532567  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||| ||| ||||    
T  46532568 ccttaccaaatgagttaagctca 46532590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 8310772 - 8310661
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||| | |||||||||||||||||| | |||||||||| ||   || | ||||||||||| ||||||| |||| ||||| |||||||    
T  8310772 gtcaagtagcctagcggttggagaaattcaccttaaag-taaaatagtggggta---tccggggttcgaaccctgacccctgcatatataatacattatc 8310677  T
Q  239 ccttatcaagtgagct 254  Q
     |||| ||||||||||    
T  8310676 tcttaccaagtgagct 8310661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 35195587 - 35195710
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||| ||||||||||||||  |||||  |  ||   | ||||||||||| |  |||| |||| |  ||||||||||    
T  35195587 gtcaagtagcctagcggctagagaaatttaccttaaaggtgaataagtggagtgtac---ggggttcgaaccctggtccctgcatataatatgcattatc 35195683  T
Q  239 ccttatcaagtgagctaaactcacatg 265  Q
    |||||| ||||||||||| ||||||||    
T  35195684 ccttattaagtgagctaagctcacatg 35195710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 29332403 - 29332361
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  29332403 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaa 29332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 25299978 - 25299878
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||||| ||||||||||||||  ||||||||||||||| |    ||   ||| ||||||| ||||||| |||| |||||||||||||    
T  25299978 gtcaagtagcctagcggctggagaaattcaccttcgaggtgaaatagtggggt---gtccagggtacgaaccctgacccctgcatatataatgcattatc 25299882  T
Q  239 cctt 242  Q
    ||||    
T  25299881 cctt 25299878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 7438740 - 7438621
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| ||||| ||||||||||||| ||| ||||  |||||| |    || |  ||||||||||||||||||||| | ||  |||||||||    
T  7438740 gtcaagtagtctagtggctaaagaaattcacctttaagatgaataagtggggtg---tccggagttcgaaccccgacccctacacaaattgtgcattatc 7438644  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  7438643 ccttaccaaatgagctaagctca 7438621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 22779341 - 22779222
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    ||||||||||||  |||||||||||||||  |||||||||||  |||||| |    | || ||||||||||||||| |||  ||| |  |||||||||||    
T  22779341 tcaagtagtctattggctagagaaattcattttaaaggtgaataagtggggtg---tttggggttcgaaccccgactcctgtataaaatatgcattatcc 22779245  T
Q  240 cttatcaagtgagctaaactcac 262  Q
    |||| |||||||||||| |||||    
T  22779244 cttaccaagtgagctaagctcac 22779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 40209892 - 40210010
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| | || | |    | || |||||||||  ||||||||||||| |  ||||||| |||    
T  40209892 tcaagtagtctagtggccagagaaattcaccttaaaggtgaaaaaatgaggt---gtttggggttcgaacttcgacccctacatataatatgcattgtcc 40209988  T
Q  240 cttatcaagtgagctaaactca 261  Q
    |||| ||||||| |||| ||||    
T  40209989 cttaccaagtgatctaagctca 40210010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 44583646 - 44583588
Alignment:
Q  202 gttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| ||||    
T  44583646 gttcgaaccccgacccctacataca-aatgtattatcccttatcaaatgagttaagctca 44583588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 17916819 - 17916706
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| ||||||| | ||||||||||| |||||||||||||||| || |  |       |||||||||||||||||| |||| ||||| |||||||| |    
T  17916819 aagtagcctagcggttggagaaattcacattaaaggtgaaatagtagggtgta-------gttcgaaccccgacccctgcatatataatacattatcctt 17916727  T
Q  242 tatcaagtgagctaaactcac 262  Q
    || ||| |||||||| |||||    
T  17916726 taccaaatgagctaagctcac 17916706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 22386224 - 22386262
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaagg 177  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22386224 gtcaagtagtctagtggctagagaaattcaccttaaagg 22386262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 41618736 - 41618778
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  41618736 gtcaagtagtctggcggctagagaaattcaccttaaatgtgaa 41618778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 10123029 - 10123109
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctaca 222  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    | || ||||||||||||||||||||||    
T  10123029 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtttggggttcgaaccccgacccctaca 10123109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 14262712 - 14262816
Alignment:
Q  154 ggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagc 253  Q
    ||||||||||||||||||||||| ||||  ||| || |    || | ||||||||||||||||||| |||| ||  |||||||||||||||||| ||||     
T  14262712 ggctagagaaattcaccttaaagatgaataagtagggtg---tccggggttcgaaccccgacccctgcatatattgtgcattatcccttatcaaatgagt 14262808  T
Q  254 taaactca 261  Q
    ||| ||||    
T  14262809 taatctca 14262816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 50302830 - 50302869
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  50302830 aagtagtctagtggctagagaaattcaccttaaagatgaa 50302869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 2350351 - 2350393
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||||| |||||||||| |||||||||||    
T  2350351 gtcaagtagcctagcggctaaagaaattcactttaaaggtgaa 2350393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 2846719 - 2846776
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    |||||||||||||||||| ||| | |||||| |||||| |||||| |||||||||||||    
T  2846719 ttcgaaccccgacccctatatataaaatgcaatatccc-tatcaactgagctaaactca 2846776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 4127018 - 4126976
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||    
T  4127018 gtcaagtagtctagtggctagataaattcaccttaaagatgaa 4126976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 27054815 - 27054773
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  27054815 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 27054773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 42946443 - 42946485
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||    
T  42946443 gtcaagtagcctaacggctagagaaattcacctttaaggtgaa 42946485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 43109214 - 43109256
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  43109214 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 43109256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 1862902 - 1862935
Alignment:
Q  229 atgcattatcccttatcaagtgagctaaactcac 262  Q
    |||||||||||||||||||||||||||| |||||    
T  1862902 atgcattatcccttatcaagtgagctaagctcac 1862935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 2017661 - 2017697
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  2017661 gtcaagtagtttagtggctagagaaattcaccttaaa 2017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 5680774 - 5680734
Alignment:
Q  199 gaggttcgaaccccgacccctacata-cataatgcattatc 238  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  5680774 gaggttcgaaccccgacccctacatataataatgcattatc 5680734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 41160901 - 41160861
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatccctta 243  Q
    ||||||| ||||| ||| |||||||||||||||||||||||    
T  41160901 ttcgaactccgactcctgcatacataatgcattatccctta 41160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 42851566 - 42851530
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggt 178  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  42851566 aagtagtttagcggttagagaaattcaccttaaaggt 42851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 44583692 - 44583664
Alignment:
Q  153 cggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||||||||||||||||||    
T  44583692 cggctagagaaattcaccttaaaggtgaa 44583664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 2766734 - 2766840
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| | |     ||| |||||||| |||| ||||| ||||||||||||||||||    
T  2766734 gtcaagtagcctagcggctggagaaattcaccttaaaggtgaaatagtgaggt---gcctggggttcgaatcccggcccctgcatacataatgcattatc 2766830  T
Q  239 ccttatcaag 248  Q
    ||||| ||||    
T  2766831 ccttaccaag 2766840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 38690782 - 38690666
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| ||||||||||||||||||||||||||||| |||  |||||| |    || | ||||||||||||||||||| |||| |  |||||||||||||    
T  38690782 aagtagcctagcggctagagaaattcaccttaaaggagaataagtggggtg---tccggggttcgaaccccgacccctgcatataatatgcattatccct 38690686  T
Q  242 tatcaagtgagctaaactca 261  Q
    || |||||||||||| ||||    
T  38690685 taccaagtgagctaagctca 38690666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 37574391 - 37574273
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||||||||  |||||| |     | | |||| |||||||| ||||| |||||| |||||||||||    
T  37574391 gtcaagtagcctagtggctagagaaattcaccttaaaggtgaataagtggggt---gcccggggtttgaaccccggcccctgcataca-aatgcattatc 37574296  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  37574295 ccttaccaaatgagctaagctca 37574273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 2824711 - 2824661
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtggg 189  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  2824711 gtcaagtggtttagcggctggagaaattcaccttaaaggtgaaatagtggg 2824661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 49811384 - 49811505
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||||| ||||||||||||  |||||| |  | | || ||||||||||| | |||||||||| |  |||||||||     
T  49811384 gtcaagtagcctagcggctagagaaattcatcttaaaggtgaataagtggggt--attatg-ggttcgaaccctg-cccctacatataatatgcattatt 49811479  T
Q  239 ccttatcaagtgagctaaactcacat 264  Q
    ||||| |||||||| ||| |||||||    
T  49811480 ccttaccaagtgagataagctcacat 49811505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 56555667 - 56555568
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||| |||| ||| |||||||||||||||||||||||||||||  |||||| |    |  ||||||||||||||||||||| |||| | |||||||||||    
T  56555667 gtcaggtagcctaacggctagagaaattcaccttaaaggtgaataagtggggt---gttcgaggttcgaaccccgacccctgcatata-aatgcattatc 56555572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 16556570 - 16556451
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    |  | ||||||||||||||||||| || | ||  |||||||||    
T  16556570 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gttcggggttcgaaccccgacccctgcacatattgtgcattatc 16556474  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  16556473 ccttaccaaatgagctaagctca 16556451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 11491195 - 11491309
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || | ||||||||| ||| ||||| || | || ||||||||||    
T  11491195 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtccggggttcgaactccggcccctgcacaaattatgcattatc 11491291  T
Q  239 ccttatcaagtgagctaa 256  Q
    |||| |||| ||||||||    
T  11491292 ccttgtcaaatgagctaa 11491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 29889757 - 29889875
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| ||||||||||||||||||||||||||| |||||  | ||||  |   || || |||||||||||| ||||| |||| |  |||||||||||||    
T  29889757 aagtagcctagcggctagagaaattcaccttaaatgtgaataaatggggca---tccgaagttcgaaccccggcccctgcatataatatgcattatccct 29889853  T
Q  242 tatcaagtgagctaaactcaca 263  Q
    ||   |||||||||| ||||||    
T  29889854 tacatagtgagctaagctcaca 29889875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 45355694 - 45355794
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||      || | |||||||||||||||||||||| | ||  |||||||||    
T  45355694 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggg----tgtccggggttcgaaccccgacccctacacatattgtgcattatc 45355789  T
Q  239 cctta 243  Q
    |||||    
T  45355790 cctta 45355794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 45369435 - 45369535
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||      || | |||||||||||||||||||||| | ||  |||||||||    
T  45369435 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggg----tgtccggggttcgaaccccgacccctacacatattgtgcattatc 45369530  T
Q  239 cctta 243  Q
    |||||    
T  45369531 cctta 45369535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 49607666 - 49607627
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  49607666 aagtagtctatcggctagagaaattcaccttaaaggtgaa 49607627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 25234835 - 25234946
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    ||||||||||||| || |||||||||||||||||||| ||||  | |||| |    |||| |||||||||| | |||||||||   ||  ||||||||||    
T  25234835 tcaagtagtctagtggttagagaaattcaccttaaagatgaataactggggt---gtctggggttcgaacctcaacccctacacttattgtgcattatcc 25234931  T
Q  240 cttatcaagtgagct 254  Q
    |||||||| ||||||    
T  25234932 cttatcaaatgagct 25234946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 35733491 - 35733451
Alignment:
Q  141 caagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  35733491 caagtagtctagcggctaaagaaactcaccttaaaggtgaa 35733451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 48404113 - 48404232
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||| ||||||||||||||||| ||||  |||| | |    || | ||||||||||||||| |||||| | || || |||||||    
T  48404113 gtcaagtagcctagtggctaaagaaattcaccttaaagatgaataagtgaggtg---tccggggttcgaaccccgacacctacacatattatacattatc 48404209  T
Q  239 ccttatcaagtgagctaaactca 261  Q
     |||||||| |||||||| ||||    
T  48404210 tcttatcaaatgagctaagctca 48404232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 49607992 - 49607956
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggt 178  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49607992 aagtagtctagtggctagagaaattcaccttaaaggt 49607956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 2931180 - 2931141
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  2931180 aagtagtctagtggctagagaaattcaccttaaagatgaa 2931141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 53759032 - 53758974
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    ||||||| ||||||||| |||| ||| |||||||||||||| ||| ||||||||||||||    
T  53759032 ttcgaactccgacccctgcatatata-tgcattatcccttaccaattgagctaaactcac 53758974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 21200645 - 21200611
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaag 176  Q
    |||||||||| ||||||||||||||||||||||||    
T  21200645 aagtagtctaacggctagagaaattcaccttaaag 21200611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 35305101 - 35305059
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||||||||||| |||||||||| |||||    
T  35305101 gtcaagtagcctagcggctagagaaaatcaccttaaaagtgaa 35305059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 46283241 - 46283199
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| | ||||||||||||||||||||| ||||    
T  46283241 gtcaagtagtctagtgactagagaaattcaccttaaagatgaa 46283199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 33993656 - 33993709
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaa 256  Q
    |||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||    
T  33993656 ttcgaatcccgacccctgcatatgttatgtattatcccttatcaagtgagctaa 33993709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 37889583 - 37889624
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  37889583 tcaagtagcctagtggctagagaaattcaccttaaaagtgaa 37889624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 42154685 - 42154648
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaag 176  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  42154685 gtcaagtagcccagcggctagagaaattcaccttaaag 42154648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 42381115 - 42381160
Alignment:
Q  196 tctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    ||||||||||||||||||||||||||||| |  ||||| |||||||    
T  42381115 tctgaggttcgaaccccgacccctacatataacatgcaatatccct 42381160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 43362203 - 43362263
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    |||||||||||||||||||  ||| ||  |||||||||||||| ||| |||||||| ||||    
T  43362203 ggttcgaaccccgacccctgaatatattgtgcattatcccttagcaaatgagctaagctca 43362263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 9489577 - 9489476
Alignment:
Q  158 agagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaa 257  Q
    ||||||||||| ||||||||||||||||| || ||   ||   ||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||    
T  9489577 agagaaattcatcttaaaggtgaaatagtagggta---tccagggttcgaaccccggcccctgcatacataatgcattatcccttaccaagcgagctaaa 9489481  T
Q  258 ctcac 262  Q
    |||||    
T  9489480 ctcac 9489476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 166907 - 166787
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||| |||||||||| |||||||||||  |||| | |    |||| ||||||||||||| ||||| |||| || ||||||||||    
T  166907 gtcaagtagcctagcggctaaagaaattcactttaaaggtgaataagtgaggtg---tctggggttcgaaccccggcccctgcataaattatgcattatc 166811  T
Q  239 ccttatcaagtgagctaaactcac 262  Q
    ||||| |||||||||||| |||||    
T  166810 ccttaccaagtgagctaagctcac 166787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 48717531 - 48717415
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    ||||||||| |||||||| |||||||||||||||||| ||||| |||||| |    | || |||||||||||| |||||| ||||||||||| ||||| |    
T  48717531 tcaagtagtttagcggctggagaaattcaccttaaagatgaaaaagtggggt---gtttggggttcgaacccctacccctgcatacataatgtattattc 48717435  T
Q  240 cttatcaagtgagctaaact 259  Q
    |||| ||| |||| ||||||    
T  48717434 cttaccaaatgagttaaact 48717415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 50271848 - 50271730
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||||||||| |||||||||||||||||||||||||  |||||| |  ||   | |||||||||| || ||||| |||||| |||||||||||    
T  50271848 gtcaagtagtctagcggttagagaaattcaccttaaaggtgaataagtgggatgtac---ggggttcgaaccacggcccctgcataca-aatgcattatc 50271753  T
Q  239 ccttatcaagtgagctaaactca 261  Q
     |||| ||| |||||||| ||||    
T  50271752 tcttaccaaatgagctaagctca 50271730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 1102672 - 1102786
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||| |    ||   ||||||||| ||| ||||| |||| || ||||||||||    
T  1102672 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggt---gtccatggttcgaactccgtcccctgcataaattatgcattatc 1102768  T
Q  239 ccttatcaagtgagctaa 256  Q
    ||||| || |||||||||    
T  1102769 ccttaccaggtgagctaa 1102786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 11661201 - 11661259
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  11661201 ttcgaactccgacccctatataaattatgcattatcccttatcaagtgagctaaactca 11661259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 31435477 - 31435578
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  ||||||   |  || |||||||||||||| ||||||||| | ||  |||||||||    
T  31435477 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtggg---atgtccgaggttcgaaccccaacccctacacatattgtgcattatc 31435573  T
Q  239 cctta 243  Q
    |||||    
T  31435574 cctta 31435578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 27394626 - 27394515
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||| |    || | ||||| ||||||  ||||| |||| | |||||||||||    
T  27394626 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggt---gtccggggttcaaaccccagcccctgcatata-aatgcattatc 27394531  T
Q  239 ccttatcaagtgagct 254  Q
    ||||| ||||||||||    
T  27394530 ccttaccaagtgagct 27394515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 45431743 - 45431627
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| ||||||||||| |||||||||||||||||||||  |||||| |    || | ||||||||||| ||||||| |||| |  | |||||||||||    
T  45431743 aagtagcctagcggctagggaaattcaccttaaaggtgaataagtggggt---gtccggggttcgaaccctgacccctgcataaaatacgcattatccct 45431647  T
Q  242 tatcaagtgagctaaactca 261  Q
    || |||||||||||| ||||    
T  45431646 taccaagtgagctaagctca 45431627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 50676843 - 50676962
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| || |||||||||||||||||||||||||  |||||| |    |  | |||||||||||| ||||||||||| |  ||| ||| ||    
T  50676843 gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggt---gttcggggttcgaaccccaacccctacatataatatgtattgtc 50676939  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| |||||||| ||||||||    
T  50676940 ccttaccaagtgagttaaactca 50676962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 37756392 - 37756502
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| |||||||| ||||||| |||| |||||||||||  |||||| |    | || ||||||||||||  ||||| |||| || |||||||||||||    
T  37756392 aagtagcctagcggcgagagaaactcacgttaaaggtgaataagtggggtg---tttggggttcgaaccccagcccctgcataaattatgcattatccct 37756488  T
Q  242 tatcaagtgagcta 255  Q
    ||||||||||||||    
T  37756489 tatcaagtgagcta 37756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 54457272 - 54457230
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  54457272 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaa 54457230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 54964517 - 54964567
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtggg 189  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  54964517 gtcaagtagcctagcggctggagaaatacaccttaaaggtgaaatagtggg 54964567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 50332935 - 50332976
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  50332935 tcaagtagtctagcggctagagaaattcatcttaaaggtgaa 50332976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 32421467 - 32421348
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||| ||| ||||||| ||||||| ||||||| ||||  ||||||    | |  ||||||||||||||||||||| |||| || ||||||||||    
T  32421467 gtcaagtagtttagtggctagaaaaattcatcttaaagatgaataagtgggg---agttcgaggttcgaaccccgacccctgcatatattatgcattatc 32421371  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||  |||||||| ||||    
T  32421370 ccttaccagatgagctaagctca 32421348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 33528181 - 33528300
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    |||| ||||||||||||  ||||| || | ||  |||||||||    
T  33528181 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtctggggttcgaaccccagcccctgcacaaattgtgcattatc 33528277  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  33528278 ccttaccaaatgagctaagctca 33528300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 47864755 - 47864641
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || | |||||||||||| |||||| || | ||  |||||||||    
T  47864755 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtccggggttcgaaccccaacccctgcacatattgtgcattatc 47864659  T
Q  239 ccttatcaagtgagctaa 256  Q
    ||||| ||| ||||||||    
T  47864658 ccttaccaaatgagctaa 47864641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 8930953 - 8930995
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  8930953 gtcaagtagcctagcggctagagaaattcactttaaaggtgaa 8930995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 29645803 - 29645845
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  29645803 gtcaagtagtctagtggctagagaaattcaccttaaagatgaa 29645845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 38415002 - 38414960
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  38415002 gtcaagtagcctagcggccagagaaattcaccttaaaggtgaa 38414960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 38668247 - 38668205
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  38668247 gtcaagtagtctagtggctagagaaattcaccttaaagatgaa 38668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 39739393 - 39739351
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  39739393 gtcaagtagtctagtggctagagaaattcaccttaaagatgaa 39739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 49429568 - 49429461
Alignment:
Q  150 tagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaagt 249  Q
    ||||||||||||||||||||||||||||||||  |||||| |    || | ||||||||||| |  |||| |||||| |||||||||||||||| ||| |    
T  49429568 tagcggctagagaaattcaccttaaaggtgaataagtggggt---gtccggggttcgaaccctggtccctgcataca-aatgcattatcccttaccaaat 49429473  T
Q  250 gagctaaactca 261  Q
    ||| ||| ||||    
T  49429472 gagttaagctca 49429461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 43897721 - 43897602
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||  |||||| |    ||||||||||||||  | | ||||||||| |  || |||| |     
T  43897721 gtcaagtagcctaacggttagagaaattcaccttaaaggtgaataagtggggt---gtctgaggttcgaacatcaatccctacatataatatacattttt 43897625  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||||| |||||||||||    
T  43897624 ccttaccaagtaagctaaactca 43897602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 27471623 - 27471513
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||  |||||| |    || | |||||||||||| ||||||  | | || ||||||||||    
T  27471623 gtcaagtagtctagtggctagagaaatttaccttaaagatgaataagtggggt---gtccggggttcgaaccccaacccctgtacatattatgcattatc 27471527  T
Q  239 ccttatcaagtgag 252  Q
    ||||| ||| ||||    
T  27471526 ccttaccaaatgag 27471513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 38869226 - 38869277
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgag 252  Q
    ||||||||||||||||||| |||  || ||||||||||||||| ||||||||    
T  38869226 ggttcgaaccccgacccctgcatgtattatgcattatcccttaccaagtgag 38869277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 181
Target Start/End: Complemental strand, 41768481 - 41768450
Alignment:
Q  150 tagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||||||||||||||||||||||    
T  41768481 tagcggctagagaaattcaccttaaaggtgaa 41768450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 9738475 - 9738433
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||    
T  9738475 gtcaagtaatctagcggctaaagaaattcaccttaaagatgaa 9738433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 11483732 - 11483690
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||||  |||||||||||||||||||||| ||||    
T  11483732 gtcaagtagtctagttgctagagaaattcaccttaaagatgaa 11483690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 22602179 - 22602221
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  22602179 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 22602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 24651243 - 24651201
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||    
T  24651243 gtcaaatagtccagcggttagagaaattcaccttaaaggtgaa 24651201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 40415538 - 40415580
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||||| | ||||||||||||||||||| |||||    
T  40415538 gtcaagtagtctagctgttagagaaattcaccttaaaagtgaa 40415580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 44062018 - 44062060
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||    
T  44062018 gtcaagtagtctagtggctagagacattcaccttaaagatgaa 44062060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 30745232 - 30745265
Alignment:
Q  229 atgcattatcccttatcaagtgagctaaactcac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  30745232 atgcattatcccttatcaaatgagctaaactcac 30745265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 55426229 - 55426192
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaag 176  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  55426229 gtcaagtagcctagtggctagagaaattcaccttaaag 55426192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 36590514 - 36590478
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  36590514 gtcaaatagtctagtggctagagaaattcaccttaaa 36590478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 10621352 - 10621470
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatcc 239  Q
    |||||||| ||||||||   |||||||||| |||||||||||| | |||| |    || | ||||| ||||| ||||||| |||||||||||||||||||    
T  10621352 tcaagtagcctagcggcggaagaaattcacattaaaggtgaaaaaatggggtg---tccggggttcaaaccctgacccctgcatacataatgcattatcc 10621448  T
Q  240 cttatcaagtgagctaaactca 261  Q
    ||||||||||||||||| ||||    
T  10621449 cttatcaagtgagctaagctca 10621470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 30660072 - 30659968
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||| ||| ||||||| | || ||||| |||||||||||||||||||||| |    || | |||| |||||||||||||| |||||||||| |||||||    
T  30660072 gtcaaatagcctagcggttggaaaaatttaccttaaaggtgaaatagtggggtg---tccggggtttgaaccccgacccctgcatacataatacattatc 30659976  T
Q  239 ccttatca 246  Q
    ||||||||    
T  30659975 ccttatca 30659968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 19957300 - 19957411
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatccct 241  Q
    |||||| ||||| |||||||||||||||||||||||||||  |||||| |    || | |||||||||| || ||||| |||| |  |||||||||||||    
T  19957300 aagtagcctagctgctagagaaattcaccttaaaggtgaataagtggggt---gtccggggttcgaacctcgtcccctgcatataatatgcattatccct 19957396  T
Q  242 tatcaagtgagctaa 256  Q
    || ||||||||||||    
T  19957397 taccaagtgagctaa 19957411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 38289211 - 38289325
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||  |||||| |    | |||||||||||||||||||||| || | ||  |||||||||    
T  38289211 gtcaagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtg---tttgaggttcgaaccccgacccctgcacatattgtgcattatc 38289307  T
Q  239 ccttatcaagtgagctaa 256  Q
    ||||| ||| ||||||||    
T  38289308 ccttaccaaatgagctaa 38289325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 19733106 - 19733159
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaa 256  Q
    ||||||||||||||||| |||| || ||||||||||||||| ||| ||||||||    
T  19733106 ttcgaaccccgacccctgcatatattatgcattatcccttaccaaatgagctaa 19733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 39104725 - 39104607
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| |||||||||||| |||||||||| ||||  ||||||      || | ||||||||||||| || || || | ||  |||||||||    
T  39104725 gtcaagtagtctagtggctagagaaatccaccttaaagatgaataagtggg----tgtccggggttcgaaccccggccgctgcacatattgtgcattatc 39104630  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||||||||    
T  39104629 ccttaccaaatgagctaaactca 39104607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 3956727 - 3956763
Alignment:
Q  145 tagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3956727 tagtctagtggctagagaaattcaccttaaaggtgaa 3956763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 10201322 - 10201262
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    |||||||||||||||||||||||| || |||||||||| |||| ||| | | |||||||||    
T  10201322 ggttcgaaccccgacccctacatatattatgcattatctcttaccaactaaactaaactca 10201262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 41375606 - 41375558
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtg 187  Q
    ||||||||| ||||| ||| ||||||||||| |||||||||||||||||    
T  41375606 gtcaagtagcctagcagctggagaaattcactttaaaggtgaaatagtg 41375558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 43456687 - 43456742
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaa 256  Q
    ||||||||||||||||| |||||| ||  |||||||||||||| ||| ||||||||    
T  43456687 ggttcgaaccccgacccttacatatattgtgcattatcccttaccaaatgagctaa 43456742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 4259978 - 4259936
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  4259978 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 4259936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 8145892 - 8145850
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  8145892 gtcaagtagcgtagcggttagagaaattcaccttaaaggtgaa 8145850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 11810635 - 11810569
Alignment:
Q  196 tctgaggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    |||||| || ||||||||||| ||| ||| || ||||||||||| ||| |||||||||||| |||||    
T  11810635 tctgagttttgaaccccgaccgctatatatattatgcattatccattaccaagtgagctaagctcac 11810569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 35790877 - 35790915
Alignment:
Q  202 gttcgaaccccgacccctacatacataatgcattatccc 240  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  35790877 gttcgaaccccggcccctgcatacataatgcattatccc 35790915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 43413862 - 43413904
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  43413862 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 43413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 43508483 - 43508537
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagcta 255  Q
    ||||| ||||||| |||||||||| || ||||||| ||||||||||| |||||||    
T  43508483 ggttcaaaccccggcccctacatatattatgcattgtcccttatcaactgagcta 43508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 279976 - 280009
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaa 175  Q
    ||||||||||||| ||||||||||||||||||||    
T  279976 aagtagtctagcgactagagaaattcaccttaaa 280009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 635876 - 635843
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaa 175  Q
    ||||||||||||| ||||||||||||||||||||    
T  635876 aagtagtctagcgactagagaaattcaccttaaa 635843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 821679 - 821646
Alignment:
Q  142 aagtagtctagcggctagagaaattcaccttaaa 175  Q
    ||||||||||||| ||||||||||||||||||||    
T  821679 aagtagtctagcgactagagaaattcaccttaaa 821646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 11289430 - 11289490
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    ||||||||||||  |||||||||| | |||||| |||||| |||||| ||||||||||||||    
T  11289430 ggttcgaaccccagcccctacatataaaatgcaatatccc-tatcaaatgagctaaactcac 11289490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 31220384 - 31220343
Alignment:
Q  221 catacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  31220384 catatataatgcattatcccttaccaagtgagctaagctcac 31220343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 22652743 - 22652683
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||||| ||| ||||| || | || ||||||||||||||||||| |||||||| ||||    
T  22652743 ggttcgaacaccggcccctgcacaaattatgcattatcccttatcaaatgagctaagctca 22652683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 27102310 - 27102358
Alignment:
Q  141 caagtagtctagcggctagagaaattcaccttaaaggtgaaatagtggg 189  Q
    |||||||||||| ||||||||||||||||||| ||  ||||| ||||||    
T  27102310 caagtagtctagtggctagagaaattcacctttaacatgaaaaagtggg 27102358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 31220460 - 31220412
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgg 188  Q
    |||| ||| |||||||| | |||||||||||||||| ||||||||||||    
T  31220460 tcaattagcctagcggccaaagaaattcaccttaaatgtgaaatagtgg 31220412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 20191560 - 20191440
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||  |||||  |    || | ||||||||||||||||||| |||| | |||||||||||    
T  20191560 gtcaagtagtctagtggccagagaaatttaccttaaaggtgaataagtggagtg---tccggggttcgaaccccgacccctgcatata-aatgcattatc 20191465  T
Q  239 ccttatcaagtgagctaaactcaca 263  Q
    ||||| |||||||| ||| ||||||    
T  20191464 ccttaccaagtgagttaagctcaca 20191440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 31991798 - 31991856
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||    
T  31991798 ttcgaaccccgacccctgcatatataatgcattatcccttaccaagtgagctaagctca 31991856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 34729590 - 34729481
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||||  ||||| |||||||||||||||||||||||||  |||||| |    || | ||||||||||||||||||| |||| |  ||||||||||    
T  34729590 gtcaagtagttaagcggttagagaaattcaccttaaaggtgaataagtggggtg---tccg-ggttcgaaccccgacccctgcatataatatgcattatc 34729495  T
Q  239 ccttatcaagtgag 252  Q
    ||||| ||||||||    
T  34729494 ccttaccaagtgag 34729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 12256474 - 12256514
Alignment:
Q  141 caagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12256474 caagtagcctagcggctagagaaattcaccttaaaggtgaa 12256514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 38503233 - 38503352
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    |||||||||||||  ||||||||||||||||||||||| ||||  |||||| |    || | ||||||||||||| ||||| || | ||  |||||||||    
T  38503233 gtcaagtagtctattggctagagaaattcaccttaaagatgaataagtggggt---gtccggggttcgaaccccggcccctgcacatattgtgcattatc 38503329  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  38503330 ccttaccaaatgagctaagctca 38503352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 15680877 - 15680919
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  15680877 gtcaagtagcctagcggttagagaaattcaccttaaaggtgaa 15680919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 12256524 - 12256583
Alignment:
Q  203 ttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcac 262  Q
    ||||||||||||||||| |||| || |||||||||| | || |||||||||||| |||||    
T  12256524 ttcgaaccccgacccctgcatatattatgcattatctcataccaagtgagctaagctcac 12256583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 3294202 - 3294160
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||    
T  3294202 gtcaagtagtctagcgactatagaaattcaccttaaagatgaa 3294160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 5039799 - 5039757
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||    
T  5039799 gtcaagtagtctagtggctagagaaatttaccttaaagatgaa 5039757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 15470597 - 15470639
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||    
T  15470597 gtcaagtagtttagtggctagagaaattcaccttaaagatgaa 15470639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 33545363 - 33545405
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  33545363 gtcaagtagcctagtggctagagaaattcaccttaaagatgaa 33545405  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 1572228 - 1572187
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcaccttaaaggtgaa 181  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||    
T  1572228 tcaagtagtctagtggctagagaaattcacctttaagatgaa 1572187  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 13547506 - 13547442
Alignment:
Q  202 gttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactcacatgga 267  Q
    ||||||||| ||| || ||||||||| ||||||||| ||||| ||| ||||||||||| |||||||    
T  13547506 gttcgaacctcgaaccttacatacattatgcattat-ccttaccaattgagctaaacttacatgga 13547442  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 15696264 - 15696207
Alignment:
Q  204 tcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    ||||| |||| |||||||| | ||  |||||||||||||||||| |||||||||||||    
T  15696264 tcgaatcccggcccctacacatattgtgcattatcccttatcaaatgagctaaactca 15696207  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 16644502 - 16644543
Alignment:
Q  196 tctgaggttcgaaccccgacccctacatacataatgcattat 237  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  16644502 tctgaggttcaaactccgacccctgcatacataatgcattat 16644543  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 26671701 - 26671669
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcacctt 172  Q
    ||||||||||||| |||||||||||||||||||    
T  26671701 tcaagtagtctagtggctagagaaattcacctt 26671669  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 26943298 - 26943266
Alignment:
Q  140 tcaagtagtctagcggctagagaaattcacctt 172  Q
    ||||||||||||| |||||||||||||||||||    
T  26943298 tcaagtagtctagtggctagagaaattcacctt 26943266  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 27278784 - 27278812
Alignment:
Q  196 tctgaggttcgaaccccgacccctacata 224  Q
    |||||||||||||||||||||||||||||    
T  27278784 tctgaggttcgaaccccgacccctacata 27278812  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 31154153 - 31154209
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaa 257  Q
    |||||||| |||  ||||| |||| || ||| |||||||||||||||||||||||||    
T  31154153 ggttcgaatcccagccccttcataaattatgtattatcccttatcaagtgagctaaa 31154209  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 31154281 - 31154341
Alignment:
Q  201 ggttcgaaccccgacccctacatacataatgcattatcccttatcaagtgagctaaactca 261  Q
    |||||||| |||  ||||| |||| || ||| ||||||| |||||||||||||||||||||    
T  31154281 ggttcgaatcccagccccttcataaattatgtattatccgttatcaagtgagctaaactca 31154341  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 419831 - 419712
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaaatagtgggctaaactctgaggttcgaaccccgacccctacatacataatgcattatc 238  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  |||||| |    || | ||||||||||||| ||||| || | ||  | |||||||    
T  419831 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggt---gtccggggttcgaaccccggcccctgcacatattgttcattatc 419735  T
Q  239 ccttatcaagtgagctaaactca 261  Q
    ||||| ||| |||||||| ||||    
T  419734 ccttaccaaatgagctaagctca 419712  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 44331 - 44367
Alignment:
Q  139 gtcaagtagtctagcggctagagaaattcaccttaaa 175  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  44331 gtcaagtagtctggcggctagaaaaattcaccttaaa 44367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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