View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14938_low_11 (Length: 261)
Name: NF14938_low_11
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 564789 - 564992
Alignment:
| Q |
19 |
actcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatctg |
118 |
Q |
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| T |
564789 |
actcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatccg |
564888 |
T |
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| Q |
119 |
tgttaatggaaggttgatttggttaattaaataggataattaagacaagaacaaaacaaacggctagttgtcatgttgtacatatgatagtgtaaacaag |
218 |
Q |
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| T |
564889 |
tgttaatggaaggttgatttggttaattaaataagataattaagacaagaac--aacaaacggctagttgtcatgttgtacatatgatagtgtaaacaag |
564986 |
T |
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| Q |
219 |
aataat |
224 |
Q |
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| T |
564987 |
agtaat |
564992 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 874139 - 874194
Alignment:
| Q |
53 |
gactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
108 |
Q |
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|||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
874139 |
gacttaaaccaaagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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