View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14938_low_15 (Length: 201)
Name: NF14938_low_15
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_low_15 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16861882 - 16862082
Alignment:
| Q |
1 |
tgaacctcaatgactatatttttgagcatgtgagtaattaaattgttcttctcaatactattcagttttttgtttatttattgcacctcagtaaaagagt |
100 |
Q |
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| T |
16861882 |
tgaacctcaatgactatatttttgagcatgtgagtaattaaattgttcttctcaataccattcagttttttgtttatttattgcacctcagtaaaagagt |
16861981 |
T |
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| Q |
101 |
gaggagttttatggccaaacaatcgaggcgatttcttaatctacagacgtgctaatcgaggctttggaagacaattacaaccaaagaatgaaaattgaaa |
200 |
Q |
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| T |
16861982 |
aaggagttttatggccaaacaatcgaggcgatttcttaatctacagtcgtgctaatcgaggctttggaagacaattacaaccaaagaatgaaaactgaaa |
16862081 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
16862082 |
t |
16862082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7284831 - 7284742
Alignment:
| Q |
1 |
tgaacctcaatgactatatttttgagcatgtgagtaattaaattgttcttctcaatactattcagttttttgtttatttattgcacctca |
90 |
Q |
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| T |
7284831 |
tgaaccttaatgactgtatttttgatcgcgcgagtagttaaattattcttctcaataccattcaattttttgtttttttattgcacctca |
7284742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 7281905 - 7281847
Alignment:
| Q |
32 |
gagtaattaaattgttcttctcaatactattcagttttttgtttatttattgcacctca |
90 |
Q |
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| T |
7281905 |
gagtagttaaattcttcttctcaataccattcaattttttgtttttttattgcacctca |
7281847 |
T |
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