View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14938_low_2 (Length: 553)
Name: NF14938_low_2
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 40844081 - 40843599
Alignment:
| Q |
20 |
acatgaagacagtaaaggaagctttaggtgttggggacttgaaatttgaatattgcagtttcttagtacacgctgccttgacggaggattggatgaaaaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40844081 |
acatgaagacagtaaaggaagctttaggtgttggggacttgaaatttgaatattgcagtttcttagtacatgctgccttgacggaggattggatgaaaaa |
40843982 |
T |
|
| Q |
120 |
tcttgaagtgggtattcctactcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattggcttggtaagctcaat |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843981 |
tcttgaagtgggtattcctgctcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattggcttggtaagctcaat |
40843882 |
T |
|
| Q |
220 |
taatttttccaatcttaaacaagatacaaattagttagttatagaactctaaatgtgcttctcatttgttagggaattcgaggtgggttgatgccatgaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843881 |
taatttttccaatcttaaacaagatacaaattagttagttatagaactctaaatgtgcttctcatttgttagggaattcgaggtgggttgatgccatgaa |
40843782 |
T |
|
| Q |
320 |
gtggtcaggtcagacaacatttaaggagtctcctacaacttcatttttggttgatagtgaagaagcaggaattctgaaaagccatggacctttggctttc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843781 |
gtggtcaggtcagacaacatttaaggagtctcctacaacttcatttttggtggatagtgaagaagcaggaattctgaaaagccatggacctttggctttc |
40843682 |
T |
|
| Q |
420 |
cttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagaaacttcaaattaaaagtgt |
502 |
Q |
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| T |
40843681 |
cttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagacacttcaaattaaaagtgt |
40843599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 261 - 517
Target Start/End: Complemental strand, 40839222 - 40838967
Alignment:
| Q |
261 |
tagaactctaaatgtgcttctcatttgttagggaattcgaggtgggttgatgccatgaagtggtcaggtcagacaacatttaaggagtctcctacaactt |
360 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
40839222 |
tagaattctaaatgtgcttctcatttggtagggaattcaaggtggattgatgccatgaagtggtcaggtcagacagcatataaggagtctcctacaactc |
40839123 |
T |
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| Q |
361 |
catttttggttgatagtgaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagag |
460 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
40839122 |
cgtttttggttgatagtgaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggt---agtttaaggatgtattcatgagcataagcg |
40839026 |
T |
|
| Q |
461 |
tctattgatctacatagtacagaaacttcaaattaaaag--tgtctggttttcgacata |
517 |
Q |
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||||| |||||| ||||||| ||||||||||||||| |||||||| ||||||||| |
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| T |
40839025 |
gctattcgtctacaatgtacagacacttcaaattaaaagtttgtctggtgttcgacata |
40838967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 40839643 - 40839448
Alignment:
| Q |
20 |
acatgaagacagtaaaggaagctttaggtgttggggacttgaaatttgaatattgcagtttcttagtacacgctgccttgacggaggattggatgaaaaa |
119 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||| | |||| || | || || | |||||||||||||||| |
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| T |
40839643 |
acatgaagatagtaaaggaagctttaggtgttggggacttggaatttgtttcttgcagtagcacagtatacaataccatgttgcaggattggatgaaaaa |
40839544 |
T |
|
| Q |
120 |
tcttgaagtgggtattcctactcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattggcttggtaagct |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839543 |
tcttgaagtgggtattcctgctcttcttgaggatggaatcaagttacttgtgtatgccggagaaaaagatctaatatgcaattggcttggtaagct |
40839448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 40850195 - 40849988
Alignment:
| Q |
20 |
acatgaagacagtaaaggaagctttaggtgttggggacttgaaatttgaatattgcagtttcttagtacacgctgccttgacggaggattggatgaaaaa |
119 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |||||| | ||||||| | |||| || |||| || | |||||||||||||||| |
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| T |
40850195 |
acatgaagtcagtaagggaagctttaggtgttggggacttggaatttgtttcttgcagtagcacagtatacagtgccatgttgcaggattggatgaaaaa |
40850096 |
T |
|
| Q |
120 |
tcttgaagtgggtattcctactcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattggcttggtaagctcaat |
219 |
Q |
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||||||||| ||||||||| ||||||| ||||||||||||||| | |||||||| || |||||| ||||||| ||||||||||||||||||||| || || |
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| T |
40850095 |
tcttgaagttggtattcctgctcttctggaggatggaatcaaggtgcttgtgtatgctggagaagaagatctcatatgcaattggcttggtaagttcgat |
40849996 |
T |
|
| Q |
220 |
taattttt |
227 |
Q |
| |
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|| ||||| |
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| T |
40849995 |
tacttttt |
40849988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 447
Target Start/End: Complemental strand, 40849773 - 40849594
Alignment:
| Q |
269 |
taaatgtgcttctcattt-gttagggaattcgaggtgggttgatgccatgaagtggtcaggtcagacaacatttaaggagtctcctacaacttcattttt |
367 |
Q |
| |
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|||||||| ||||||||| | ||||||||| |||||||| |||||||||| |||||||||||| | | |||||||| ||||||||| || ||| ||| |
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| T |
40849773 |
taaatgtgtttctcattttggcagggaattcaaggtgggtcgatgccatgacgtggtcaggtcaaaaagaatttaaggtgtctcctacgaccccatattt |
40849674 |
T |
|
| Q |
368 |
ggttgatagtgaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattc |
447 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||| | |||||||| |||||||||||| |||||||||||| |
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| T |
40849673 |
ggttgatagtgaagaagcaggagatctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattc |
40849594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 19574395 - 19574291
Alignment:
| Q |
109 |
tggatgaaaaatcttgaagtgggtattcctactcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattggcttg |
208 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||||||| | || ||||| || || || ||| | ||||| |||||||| ||||||| |
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| T |
19574395 |
tggatgaggaatcttgaagttggtattcctatccttcttgaggatggaatcgatttgcttgtttatgctggggaatatgatctcatatgcaactggcttg |
19574296 |
T |
|
| Q |
209 |
gtaag |
213 |
Q |
| |
|
||||| |
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| T |
19574295 |
gtaag |
19574291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 42338914 - 42339020
Alignment:
| Q |
105 |
ggattggatgaaaaatcttgaagtgggtattcctactcttcttgaggatggaatcaagttacttgtgtacgccggagaaaaagatctaatatgcaattgg |
204 |
Q |
| |
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||||||||||| ||||||||||| ||||||||| | || ||||||||||||||||| || ||||| || || || ||| | ||||| || ||||| ||| |
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| T |
42338914 |
ggattggatgaggaatcttgaagtcggtattcctgccctgcttgaggatggaatcaatttgcttgtttatgctggggaatatgatctcatctgcaactgg |
42339013 |
T |
|
| Q |
205 |
cttggta |
211 |
Q |
| |
|
||||||| |
|
|
| T |
42339014 |
cttggta |
42339020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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