View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14938_low_6 (Length: 397)
Name: NF14938_low_6
Description: NF14938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14938_low_6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 3056530 - 3056926
Alignment:
| Q |
1 |
cactttggcaagttttcttttcagtgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtattta |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056530 |
cactttggcaagttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtattta |
3056629 |
T |
|
| Q |
101 |
catgaagagtgcatcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056630 |
catgaagagtgcatcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattag |
3056729 |
T |
|
| Q |
201 |
ccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056730 |
ccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagc |
3056829 |
T |
|
| Q |
301 |
taaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056830 |
taaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagca |
3056926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 3035662 - 3036058
Alignment:
| Q |
1 |
cactttggcaagttttcttttcagtgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtattta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035662 |
cactttggcaagttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtattta |
3035761 |
T |
|
| Q |
101 |
catgaagagtgcatcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattag |
200 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3035762 |
catgaagagtgcatcactaggatcattcattgtgacataaagcctcaaaacatactccttgatgattacttcaatgcaagaatttctgattttggattag |
3035861 |
T |
|
| Q |
201 |
ccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagc |
300 |
Q |
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| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035862 |
caaagttgttgaacatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagc |
3035961 |
T |
|
| Q |
301 |
taaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035962 |
taaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagca |
3036058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 3070388 - 3069987
Alignment:
| Q |
1 |
cactttggcaagttttcttttcagtg------aagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtg |
94 |
Q |
| |
|
||||||||||||||||||||||| || | || ||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3070388 |
cactttggcaagttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactaaggctagaacttgcaataggtatagctagaggacttgtg |
3070289 |
T |
|
| Q |
95 |
tatttacatgaagagtgcatcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3070288 |
tatttacatgaagagtgcatcactaggatcatccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttg |
3070189 |
T |
|
| Q |
195 |
gattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctat |
294 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070188 |
gattagcaaagctgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctat |
3070089 |
T |
|
| Q |
295 |
cacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaa |
394 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070088 |
cacagctaaggttgatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaa |
3069989 |
T |
|
| Q |
395 |
gc |
396 |
Q |
| |
|
|| |
|
|
| T |
3069988 |
gc |
3069987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 3049081 - 3049026
Alignment:
| Q |
341 |
ataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagc |
396 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
3049081 |
ataatttcatgtagaagatgtgttgaagaaatggatcaagaaaatgaatacaaagc |
3049026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 41 - 297
Target Start/End: Original strand, 21457475 - 21457736
Alignment:
| Q |
41 |
ccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatcca-----ttgtga |
135 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| |||||||||| ||| || | |||||||||||||| ||||| |||||| ||| | |||||| |
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| T |
21457475 |
ccaaattggaaactaagacttgaaaatgcaatagggatagctagagtactggtat-tttacatgaagagtccatcaataggatcatctattgacttgtga |
21457573 |
T |
|
| Q |
136 |
cataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaac |
235 |
Q |
| |
|
|||||||||||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| |||||||| |
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|
| T |
21457574 |
cataaagcctcaaaacatacccattgatgattacttcaatgcaagaatttctgactttggattagcaaaattgttgaacatgaatttgagcgaaaccaac |
21457673 |
T |
|
| Q |
236 |
actggcataagaggaacaaaagggtatgttgcacttgaatgg-tttaaaaacatgcctatcac |
297 |
Q |
| |
|
|||| |||||| |||| |||| ||||| || ||||||||||| ||||||||||||| |||||| |
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|
| T |
21457674 |
actgccataaggggaagaaaatggtatctttcacttgaatggttttaaaaacatgcatatcac |
21457736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 28445438 - 28445582
Alignment:
| Q |
125 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
224 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| || |||||| | | ||||||||||||||| |||||||||||||| ||||| ||| || ||||||| |
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|
| T |
28445438 |
atccattgcgatataaagccacaaaatatacttctagatgatcaatacaatgcaagaatttcagattttggattagcaaagttattgttgattaatcaaa |
28445537 |
T |
|
| Q |
225 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
269 |
Q |
| |
|
|| | ||| | ||||| ||||||||||| || || |||||||||| |
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| T |
28445538 |
gccataccgaaactggaataagaggaactaagggatatgttgcac |
28445582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 28488045 - 28488189
Alignment:
| Q |
125 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
224 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || |||||| | | ||||||||| ||||| |||||||||||| | ||| | ||| || ||||||| |
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|
| T |
28488045 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaaa |
28488144 |
T |
|
| Q |
225 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
269 |
Q |
| |
|
|| | || | ||||| || ||||||||||||||||||||||||| |
|
|
| T |
28488145 |
gccacactgaaactggaattagaggaacaaaagggtatgttgcac |
28488189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 28466284 - 28466428
Alignment:
| Q |
125 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
224 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || |||||| | | ||||||||| ||||| |||||||||||| | ||| | ||| || ||||||| |
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|
| T |
28466284 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaaa |
28466383 |
T |
|
| Q |
225 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
269 |
Q |
| |
|
|| | || | ||||| || |||||||| |||||||||||||||| |
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|
| T |
28466384 |
gccacactgaaactggaattagaggaaccaaagggtatgttgcac |
28466428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 28437989 - 28438041
Alignment:
| Q |
125 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgc |
177 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||| ||| |||||| |
|
|
| T |
28437989 |
atccattgtgacataaagccacaaaacatacttctagatgatgattacaatgc |
28438041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 11004904 - 11004968
Alignment:
| Q |
137 |
ataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagc |
201 |
Q |
| |
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||||||||||| ||||| || || ||||| |||||||| ||| | ||||||||||||||||||| |
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| T |
11004904 |
ataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagc |
11004968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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