View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_high_12 (Length: 254)
Name: NF14939_high_12
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 28782593 - 28782350
Alignment:
| Q |
11 |
ggataacggagaaaacaaaaatagcatgatgtttgaagaagtttgatgaatctgagtgtaatcatttgttgttcttgtgtgaagatcactggaagtattt |
110 |
Q |
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| T |
28782593 |
ggataatggagaaaacaaaaatagcatgatgtttgaagaagtttgatgaatctgagtgtaatcatttgttgttcttgtgtgaagatcactggaagtattt |
28782494 |
T |
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| Q |
111 |
tttaaaagttactttcatgtgtatataaatgtgttatttgtgatagtttttctcactttctgtggttaataaatccatttgtatcgttaattattgcaac |
210 |
Q |
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| T |
28782493 |
tttaaaagttactttcatgtgtatataaatgtgttatttgtgatagtttttctcactttctgtggttaataaatccatttgtatcgttaattattgcaac |
28782394 |
T |
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| Q |
211 |
caaaaagttgtattctgcacactttgatctaaagcctaagcctt |
254 |
Q |
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| T |
28782393 |
caaaaagttgtattctgcacactttgatctaaagcctaagcctt |
28782350 |
T |
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