View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14939_high_4 (Length: 528)

Name: NF14939_high_4
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14939_high_4
NF14939_high_4
[»] chr7 (7 HSPs)
chr7 (203-517)||(25126380-25126714)
chr7 (13-180)||(25127852-25128019)
chr7 (203-350)||(7015599-7015746)
chr7 (203-350)||(7030957-7031104)
chr7 (203-350)||(7064585-7064732)
chr7 (210-317)||(7060143-7060250)
chr7 (135-175)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (203-317)||(854-968)
[»] chr5 (2 HSPs)
chr5 (131-175)||(15368136-15368180)
chr5 (131-175)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (131-175)||(52925759-52925803)
chr3 (131-175)||(25129670-25129714)
chr3 (134-170)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (131-175)||(4950378-4950422)
chr8 (131-175)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (135-171)||(19601714-19601750)
chr6 (131-175)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (131-175)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (131-175)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 203 - 517
Target Start/End: Complemental strand, 25126714 - 25126380
Alignment:
Q  203 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25126714 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattaaggaggcaacgaaagtgagcttcaattcacgaaatatattatccaaaatg 25126615  T
Q  303 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtgtcaaagggg 402  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25126614 caacagtcttgagcagtgtcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtttcaaagggg 25126515  T
Q  403 ttctgttctacgccaacctcattttgaatggat--------------------aagtggcatttgtttcattcagagtggctgcttttattcgttttatc 482  Q
    |||||||||||||||||||||||||||||||||                    ||| |||||| |||||||||||||||||||||||||||| |||||||    
T  25126514 ttctgttctacgccaacctcattttgaatggatatagaactagaaatctgaagaagaggcattcgtttcattcagagtggctgcttttattcattttatc 25126415  T
Q  483 tgaatcttaactacagttatttatgactgatgatg 517  Q
    |||||||||||||||||||||||||||||||||||    
T  25126414 tgaatcttaactacagttatttatgactgatgatg 25126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 25128019 - 25127852
Alignment:
Q  13 tcatcacaaaggtaacaactcactcccattatttcttttttaatgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc 112  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25128019 tcatcacaaaggtaacaactcactcccattattttttttttactgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc 25127920  T
Q  113 atcaatgaatagtgattctgtatgtttggttccatttttggaggcgtcaaaattgattctagaaattg 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25127919 atcaatgaatagtgattctgtatgtgtggttccatttttggaggcgtcaaaattgattctagaaattg 25127852  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 7015746 - 7015599
Alignment:
Q  203 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 302  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7015746 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7015647  T
Q  303 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 350  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7015646 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7015599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 7031104 - 7030957
Alignment:
Q  203 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 302  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7031104 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7031005  T
Q  303 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 350  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7031004 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7030957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 7064732 - 7064585
Alignment:
Q  203 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 302  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7064732 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7064633  T
Q  303 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 350  Q
    ||||  |||||||||   |||  || |||| |||||||||||||||||    
T  7064632 caactctcttgcgcaacgtcaccatctacacaaatacctcttcaaatc 7064585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 7060250 - 7060143
Alignment:
Q  210 aatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatgcaacagt 309  Q
    ||||| |||||| ||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||||||  |    
T  7060250 aatgcatttcattacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatgcaactct 7060151  T
Q  310 cttgcgca 317  Q
    ||||||||    
T  7060150 cttgcgca 7060143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 38123836 - 38123796
Alignment:
Q  135 tgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctaga 38123796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1302 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 968 - 854
Alignment:
Q  203 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 302  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  968 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 869  T
Q  303 caacagtcttgcgca 317  Q
    ||||  |||||||||    
T  868 caactctcttgcgca 854  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 15368136 - 15368180
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctaga 15368180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 37121478 - 37121522
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||    
T  37121478 tgtatgtttggttccatttgtagaggagccaaaattgattctaga 37121522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 52925803 - 52925759
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  52925803 tgtatgttcggttccacttttggaggagtcaaaattgattctaga 52925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 25129714 - 25129670
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    ||||||||||||| || |||| |||| ||||||||||||||||||    
T  25129714 tgtatgtttggtttcaattttcgaggggtcaaaattgattctaga 25129670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 35253593 - 35253557
Alignment:
Q  134 atgtttggttccatttttggaggcgtcaaaattgatt 170  Q
    ||||||||||||||||||||||| | |||||||||||    
T  35253593 atgtttggttccatttttggaggtgccaaaattgatt 35253557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 4950378 - 4950422
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  4950378 tgtatgtttggttccaattttggaggtgctaaaattgattctaga 4950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 41614737 - 41614781
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    ||||||||||||||||||| || ||| | ||||||||||||||||    
T  41614737 tgtatgtttggttccatttgtgtaggagccaaaattgattctaga 41614781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 19601714 - 19601750
Alignment:
Q  135 tgtttggttccatttttggaggcgtcaaaattgattc 171  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattc 19601750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 29240644 - 29240600
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||||||||||| |||||| ||  |||||||||||||||||    
T  29240644 tgtatgtttggttccacttttgggggaatcaaaattgattctaga 29240600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 7629755 - 7629799
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||    
T  7629755 tgtatgtttggttccacttttggaggagccaagattgattctaga 7629799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 20721107 - 20721063
Alignment:
Q  131 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 175  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||    
T  20721107 tgtatgttttgttccacttttggaggaatcaaaattgattctaga 20721063  T

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