View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_1 (Length: 604)
Name: NF14939_low_1
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 9 - 587
Target Start/End: Original strand, 34619109 - 34619686
Alignment:
| Q |
9 |
acatcatcagtagcagacaccgtctctgagaagcaacagtttgccggtaccggagaaaagatccgtcatccttctgaatataatggaattccatcattga |
108 |
Q |
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| T |
34619109 |
acatcatcagtagcagacaccgtctctgagaagcaacagtttgccggtaccggagaaaagatccgtcatccttctgaatataatggaattccatcattga |
34619208 |
T |
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| Q |
109 |
ctgcccgttgattgcattatattttgcccttcaattaagatttacataacctgctacaatgaagaaaacaataaggattcatccatgttgtggcacttgt |
208 |
Q |
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| T |
34619209 |
ctgcccgttgattgcattatattt-gcccttcaattaagatttacataacctgctacaatgaagaaaacaataaggattcatccatgttgtggcacttgt |
34619307 |
T |
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| Q |
209 |
tccctatgtttctatgatgtttacttcataaagattcaataaatttagaagtatgtatatgtctaagcatatatgtgcctataacttgtagctattgcaa |
308 |
Q |
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| T |
34619308 |
tccctatgtttctatgatgtttacttcataaagattcaataaatttagaagtatgtatatgtctaagcatatatgtgcctataacttgtagctattgcaa |
34619407 |
T |
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| Q |
309 |
taaaatattcaatttgccttgaatatttagccatatatgtgtcattgtattttcaatatgcatgtcgcggtccctccaagcccttaccactttctacgtc |
408 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34619408 |
taaaatattcaatttgccttcaatatttagccatatatgtgtcattgtattttcaatatgcatgtcgcggtccctccaagcccttaccactttctacgtc |
34619507 |
T |
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| Q |
409 |
atcgtctccgatatagtatcttccacatattttgannnnnnnnngttgaaaagttgtacatacaattttgaacaaacgaaggaaaccaagatatatttcc |
508 |
Q |
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| T |
34619508 |
atcgtctccgatatagtatcttccacatattttgattcttttttgttgaaaagttgtacatacaattttgaacaaacgaaggaaaccaagatatatttcc |
34619607 |
T |
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| Q |
509 |
tttgactcaaattccactatagcttgccatgcatctatgattgttttccatacatcttttgatttgacttctttccctt |
587 |
Q |
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| T |
34619608 |
tttgactcaaattccactatagcttgccatgcatctatgattgttttccatacatcttttgatttgacttctttccctt |
34619686 |
T |
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