View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_12 (Length: 260)
Name: NF14939_low_12
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 44769893 - 44770119
Alignment:
| Q |
17 |
gaaagtgcggttgctacaatgatacaagttctgaagcctaaacaacttcagcatatatatacagggcaatgtttgtagctttggaactatattgtttgaa |
116 |
Q |
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| T |
44769893 |
gaaagtgcggttgctacaatgatacaagttctgaagcctaaacaacttcagcatatatatacagggcaatgtttgtagctttggaactatattgtttgaa |
44769992 |
T |
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| Q |
117 |
tatataaagggtcatgagtacaaatgtacaatggattttaccagtgagtcccaaccaagttcttgcgtatgttttttctcccacatcgagaactcaagaa |
216 |
Q |
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| T |
44769993 |
aatataaagggtcatgagtacaaatgtacaatggattttaccagtgagtcccaaccaagttcttgcgtatgttttttgtcccacatcgagaactcaagaa |
44770092 |
T |
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| Q |
217 |
agaatatgagtaggtgttagatataaa |
243 |
Q |
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| T |
44770093 |
agaatatgagtaggtgttagatataaa |
44770119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 49107146 - 49107090
Alignment:
| Q |
42 |
aagttctgaagcctaaacaacttcagcatat-atatacagggcaatgtttgtagctt |
97 |
Q |
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| T |
49107146 |
aagttgtgaagcctaaacaacttcaagatatgatagaaagggcaatgtttgtagctt |
49107090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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