View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14939_low_14 (Length: 251)

Name: NF14939_low_14
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14939_low_14
NF14939_low_14
[»] chr1 (5 HSPs)
chr1 (13-234)||(43149931-43150152)
chr1 (175-227)||(37492656-37492708)
chr1 (165-227)||(4692961-4693023)
chr1 (179-227)||(4626724-4626772)
chr1 (165-229)||(41816653-41816717)
[»] chr2 (2 HSPs)
chr2 (165-222)||(3746961-3747018)
chr2 (165-221)||(598391-598447)
[»] chr4 (1 HSPs)
chr4 (165-227)||(23759430-23759492)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 43150152 - 43149931
Alignment:
Q  13 aatatggcaaatatagaaatattaggggtaatgctttgaatattgtttttcttaataacaatttaatattgttacttgttattatctataaggagagaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43150152 aatatggcaaatatagaaatattaggggtaatgctttgaatattgtttttcttaataacaatttaatattgttacttgttattatctataaggagagaat 43150053  T
Q  113 agaaataaagttaacacaatagtgctcatggagtttgattgagtatctcccgtcatccaatcatttaatgatatgtcatattttcacgctaatttatttt 212  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43150052 agaaataaggttaacacaatagtgctcatggagtttgattgagtatgtctcatcatccaatcatttaatgatatgtcatattttcacgctaatttatttt 43149953  T
Q  213 aaaataaatttaaatatgaaat 234  Q
    ||||||||||||||||||||||    
T  43149952 aaaataaatttaaatatgaaat 43149931  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 37492656 - 37492708
Alignment:
Q  175 atttaatgatatgtcatattttcacgctaatttattttaaaataaatttaaat 227  Q
    ||||||||  |||||||||||| ||  ||||||||||||||||||||||||||    
T  37492656 atttaatgtcatgtcatatttttacattaatttattttaaaataaatttaaat 37492708  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 4693023 - 4692961
Alignment:
Q  165 tcatccaatcatttaatgatatgtcatattttcacgctaatttattttaaaataaatttaaat 227  Q
    |||| |||| ||| ||||| ||||||||||| ||   ||||||||||||||||||||||||||    
T  4693023 tcattcaattattcaatgacatgtcatatttgcatcttaatttattttaaaataaatttaaat 4692961  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 4626724 - 4626772
Alignment:
Q  179 aatgatatgtcatattttcacgctaatttattttaaaataaatttaaat 227  Q
    ||||| |||||||||||| ||  |||||||||||||||||| |||||||    
T  4626724 aatgacatgtcatatttttacattaatttattttaaaataagtttaaat 4626772  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 41816653 - 41816717
Alignment:
Q  165 tcatccaatcatttaatgatatgtcatattttcacgctaatttattttaaaataaatttaaatat 229  Q
    ||||||||||| | |||| ||| ||| ||||| |   ||||||||||||||||||||||||||||    
T  41816653 tcatccaatcaatcaatgttatatcacatttttatattaatttattttaaaataaatttaaatat 41816717  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 3746961 - 3747018
Alignment:
Q  165 tcatccaatcatttaatgatatgtcatattttcacgctaatttattttaaaataaatt 222  Q
    ||||||||||||| |||||||||||||||||| |   || ||||||||||||||||||    
T  3746961 tcatccaatcattcaatgatatgtcatatttttatattactttattttaaaataaatt 3747018  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 598447 - 598391
Alignment:
Q  165 tcatccaatcatttaatgatatgtcatattttcacgctaatttattttaaaataaat 221  Q
    ||||||||||| | || ||||||||||||||| | | |||| |||||||||||||||    
T  598447 tcatccaatcaatcaaagatatgtcatatttttatgttaatctattttaaaataaat 598391  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 23759430 - 23759492
Alignment:
Q  165 tcatccaatcatttaatgatatgtcatattttcacgctaatttattttaaaataaatttaaat 227  Q
    ||||||||||| | |||| ||||| |||| ||||  |||||||||| ||||||||||||||||    
T  23759430 tcatccaatcaatcaatgctatgttatatcttcatactaatttattctaaaataaatttaaat 23759492  T

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