View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_15 (Length: 244)
Name: NF14939_low_15
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 50764449 - 50764678
Alignment:
| Q |
1 |
agaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764449 |
agaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgta |
50764548 |
T |
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| Q |
101 |
attcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattagatgttggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764549 |
attcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattagatgttggtga |
50764648 |
T |
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| Q |
201 |
agcaatttgagaggcttatcaagttgtttt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50764649 |
agcaatttgagaggcttatcaagttgtttt |
50764678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 35100925 - 35100847
Alignment:
| Q |
26 |
tgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
104 |
Q |
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|||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35100925 |
tgatcaggtgaatgaagacatgataggcactggtattctatatttgtggaggatgaatgtttttaatcagttgtaattc |
35100847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 35153354 - 35153576
Alignment:
| Q |
2 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaa |
101 |
Q |
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| T |
35153354 |
gaggttacggttctgtcatgaacctggtccggtgaatgaagacatgataagtattgt-attctatgtttgtggaggatgaatgttttgaattagttgcaa |
35153452 |
T |
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| Q |
102 |
ttcggggctttttgcaa------aagtttaggttcat---agtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattagat |
192 |
Q |
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|||||| ||| | ||| |||| | ||||||| |||| ||||| |||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
35153453 |
ttcgggacttctctcaacttcataagtcttggttcatcatagtctcatgttggacaaattcagaatgaga-ccatgcttaaagttttcttcaaataagat |
35153551 |
T |
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| Q |
193 |
g---ttggtgaagcaatttgagagg |
214 |
Q |
| |
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| T |
35153552 |
gttattggtgaagcaatttgagagg |
35153576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 35040631 - 35040556
Alignment:
| Q |
29 |
tcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
104 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
35040631 |
tcaggtgaatgaagacatgatagtcactgttattctatgtttgtagaggatgaatgtatttaatcagttgtaattc |
35040556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 30696153 - 30696215
Alignment:
| Q |
2 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattct |
64 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
30696153 |
gaggttaagattcggtcatgaacctgatcaggtgaatgaagacatgattggtactgttattct |
30696215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 35092237 - 35092156
Alignment:
| Q |
2 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaat |
83 |
Q |
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||||||| | ||| |||||||| ||||||||||| ||||||| || | | ||||||||| |||||||||||||| ||||| |
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| T |
35092237 |
gaggttatggttctgtcatgaacctgatcaggtgaatgaagatatcctagttactgttattgtatgtttgtggagggtgaat |
35092156 |
T |
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