View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_16 (Length: 235)
Name: NF14939_low_16
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28782335 - 28782107
Alignment:
| Q |
1 |
tataacattattgattgaaaaataaaacattagagatttttacgtaacaataattgtcatacaa-----gttctacacctacaaatatatatttgtaaca |
95 |
Q |
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| T |
28782335 |
tataacattattgattgaaaaataaaacattagagatttttacgtaacaataattgtcatacaaatatggttctacacctacaaatatatatttgtaaca |
28782236 |
T |
|
| Q |
96 |
tagtatattttgtatgtaaattcaatgtcattgaattgatgataaatactaca-tatagacaaaaaggtattggctactacccattacctgtctatacaa |
194 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28782235 |
tagtatattttgtatgtaaattcaatgccattgaattgatgataaatactacactatagacaaaaaggtattggctactacccattacctgtccatacaa |
28782136 |
T |
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| Q |
195 |
ttttatttttctttatctatattatattt |
223 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28782135 |
ttttatttttctttatctatattatattt |
28782107 |
T |
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