View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_2 (Length: 591)
Name: NF14939_low_2
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 46700413 - 46700786
Alignment:
| Q |
19 |
atgtaaaagttgtaaaatgaaaataaagaagtgagttacattttaataattttgaggaaaagaaaacatcaaaccccatctaaatctggattaaaacaaa |
118 |
Q |
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| T |
46700413 |
atgtaaaagctgtaaaatgaaaataaagaagtgagttacattttaataattttgaggaaaagaaaacatcaaaccccatctaaatctggattaaaacaaa |
46700512 |
T |
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| Q |
119 |
atcaacttgcttctcagaagcaagaaacacagaaactaagaaaatggggcgaagagaaaacttcaagaaacttcccgatttgatagagaagacaaagaat |
218 |
Q |
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| T |
46700513 |
atcaacttgcttctcagaagcaagaaacacagaaactaagaaaatggggcaaagagaaaacttcaagaaacttcccgatttgatagagaagacaaagaat |
46700612 |
T |
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| Q |
219 |
tttgaaagaaacattgtataaaatatatgaaaagagtagcattgatgggaaaaatattgcactttgagagatatatccagatcacaaaagcaagtcatca |
318 |
Q |
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| T |
46700613 |
tttgaaagaaacattgtataaaatatatgaaaagagtagcattgatgggaaaaatattgcactttgagcgatatatccagatcacaaaagcaagtcatca |
46700712 |
T |
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| Q |
319 |
aaaatagcaaataaaaacacaaattgaattgttcaagtttcaaccacttcacttaaattaaaaaccccacatgc |
392 |
Q |
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| T |
46700713 |
aaaatagcaaataaaaacacaaattgaattgttcaagtttcaaccacttcacttaaattaaaaaccccacatgc |
46700786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 46700913 - 46700978
Alignment:
| Q |
519 |
tgggaatggttaggggtgaaagtgaaacaaaccacttctaacttggaaacaggggtgttcttctct |
584 |
Q |
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| T |
46700913 |
tgggaatggttaggggtgaaagtgaaacaaaccacttctaacttggaaacaggggtgttcttctct |
46700978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 46678094 - 46678183
Alignment:
| Q |
179 |
cttcaagaaacttcccgatttgatagagaagacaaagaattttgaaagaaacattgtataaaatatatgaaaagagtagcattgatggga |
268 |
Q |
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| T |
46678094 |
cttcaagaaatttcccaatttgatagcgaagacaaagaactttgaaagaaacatggcatacattatatgagaagagtagcattaatggga |
46678183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 46677954 - 46678051
Alignment:
| Q |
47 |
aagtgagttacattttaataattttgaggaaaagaa----aacatcaaaccccatctaaatctggattaaaacaaaatcaacttgcttctcagaagca |
140 |
Q |
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| T |
46677954 |
aagtgactgacattataataattttgaggaaagaaatttaaacatcaaaacccatcttaatctgtatcaaaacaaaatcaacttgcctctcagaagca |
46678051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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