View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14939_low_3 (Length: 533)

Name: NF14939_low_3
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14939_low_3
NF14939_low_3
[»] scaffold0128 (2 HSPs)
scaffold0128 (37-347)||(44021-44331)
scaffold0128 (444-526)||(44426-44507)
[»] chr5 (3 HSPs)
chr5 (112-194)||(5003978-5004060)
chr5 (223-255)||(4691611-4691643)
chr5 (311-347)||(40980514-40980550)
[»] chr8 (8 HSPs)
chr8 (112-169)||(27789327-27789384)
chr8 (300-337)||(1203752-1203789)
chr8 (309-337)||(4080393-4080421)
chr8 (309-337)||(4084542-4084570)
chr8 (309-337)||(4102849-4102877)
chr8 (311-343)||(7140460-7140492)
chr8 (309-337)||(13327940-13327968)
chr8 (311-343)||(31812258-31812290)
[»] chr7 (3 HSPs)
chr7 (311-347)||(6587927-6587963)
chr7 (309-347)||(5833496-5833534)
chr7 (301-337)||(18102221-18102257)
[»] chr4 (7 HSPs)
chr4 (311-347)||(46803940-46803976)
chr4 (311-346)||(44916644-44916679)
chr4 (309-347)||(23553711-23553749)
chr4 (112-149)||(30206531-30206568)
chr4 (309-337)||(16667383-16667411)
chr4 (302-337)||(47326883-47326919)
chr4 (302-337)||(47341679-47341715)
[»] chr3 (5 HSPs)
chr3 (303-346)||(54016161-54016204)
chr3 (112-169)||(32711245-32711302)
chr3 (309-337)||(8165797-8165825)
chr3 (309-337)||(40497198-40497226)
chr3 (311-347)||(51339205-51339240)
[»] scaffold0727 (1 HSPs)
scaffold0727 (309-347)||(5832-5870)
[»] chr6 (2 HSPs)
chr6 (309-347)||(6016997-6017035)
chr6 (311-347)||(31568250-31568286)
[»] chr2 (4 HSPs)
chr2 (311-343)||(12016811-12016843)
chr2 (309-337)||(16123429-16123457)
chr2 (302-337)||(22704688-22704724)
chr2 (311-343)||(45062343-45062375)
[»] chr1 (3 HSPs)
chr1 (311-347)||(3168069-3168105)
chr1 (309-337)||(5875214-5875242)
chr1 (311-347)||(39310787-39310823)


Alignment Details
Target: scaffold0128 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 37 - 347
Target Start/End: Original strand, 44021 - 44331
Alignment:
Q  37 caccatcaactaccatagtttaagaaaaacatgcacaaccataaatataagnnnnnnntttgtttcaatgtttaatgaataattgatgtatctggttgat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||    
T  44021 caccatcaactaccatagtttaagaaaaacatgcacaaccataaatataagcaaaatttttgtttcaatgtttaatgaataattgatgtatctgattgat 44120  T
Q  137 agtatagaccaaacaaatcagttattcaatgaaattggaaaataaatttttgtttataataatgatggagtacattatctatcatccttcttgtattaaa 236  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  44121 agtatagaccaaacaaatcagttattcaatgaagctaaaaaagaaatttttgcttataataatgatggagtacattatctatcatccttcttatattaaa 44220  T
Q  237 tatgacttttagagtcatgtgaaatttgtcttttttgaaagcaagggtcatgtgaagttgaatattatatatgatttttctatcatgtgcaaatttgcac 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44221 tatgacttttagagtcatgtgaaatttgtcttttttgaaagcaagggtcatgtgaagttgaatattatatatggtttttctatcatgtgcaaatttgcac 44320  T
Q  337 aaattaaaaag 347  Q
    | |||||||||    
T  44321 atattaaaaag 44331  T

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Target: scaffold0128; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 526
Target Start/End: Original strand, 44426 - 44507
Alignment:
Q  444 catgtaaaatattatacgtgtttgacatataattttggtacaaattattaccaataaaattttatacttgtggtttgcttcat 526  Q
    ||||| |||| |||||| |||| |||| ||||||| |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  44426 catgtgaaattttatacatgttagacacataatttgggtacaaattataaccgatacaattttatacttgt-gtttgcttcat 44507  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 5004060 - 5003978
Alignment:
Q  112 tgaataattgatgtatctggttgatagtatagaccaaacaaatcagttattcaatgaaattggaaaataaatttttgtttata 194  Q
    ||||||||| ||||||||  || ||| ||||||| ||| | ||||||||||||||||||||| ||||  |||||||| |||||    
T  5004060 tgaataattaatgtatctaatttataatatagactaaatacatcagttattcaatgaaattgaaaaaacaatttttgcttata 5003978  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 4691643 - 4691611
Alignment:
Q  223 cttcttgtattaaatatgacttttagagtcatg 255  Q
    |||||||||||||||||||||||||||||||||    
T  4691643 cttcttgtattaaatatgacttttagagtcatg 4691611  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 40980550 - 40980514
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40980550 tttttctatcatgtgcaaatttgcacatattaaaaag 40980514  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 27789327 - 27789384
Alignment:
Q  112 tgaataattgatgtatctggttgatagtatagaccaaacaaatcagttattcaatgaa 169  Q
    |||||||||||||||||||||  ||| ||| ||||||| | |||||||||||||||||    
T  27789327 tgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaa 27789384  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 1203789 - 1203752
Alignment:
Q  300 attatatatgatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||| | |||||||||||||||||||||||||||    
T  1203789 attatatagggtttttctatcatgtgcaaatttgcaca 1203752  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 4080393 - 4080421
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  4080393 gatttttctatcatgtgcaaatttgcaca 4080421  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 4084542 - 4084570
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  4084542 gatttttctatcatgtgcaaatttgcaca 4084570  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 4102849 - 4102877
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  4102849 gatttttctatcatgtgcaaatttgcaca 4102877  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 7140460 - 7140492
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaa 343  Q
    ||||||||||||||||||||||||||| |||||    
T  7140460 tttttctatcatgtgcaaatttgcacatattaa 7140492  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 13327940 - 13327968
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  13327940 gatttttctatcatgtgcaaatttgcaca 13327968  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 31812290 - 31812258
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaa 343  Q
    ||||||||||||||||||||||||||| |||||    
T  31812290 tttttctatcatgtgcaaatttgcacatattaa 31812258  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 6587963 - 6587927
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6587963 tttttctatcatgtgcaaatttgcacatattaaaaag 6587927  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 5833534 - 5833496
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  5833534 gatttttctatcatgtgcaaatttgcacatgttaaaaag 5833496  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 18102221 - 18102257
Alignment:
Q  301 ttatatatgatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||  ||||||||||||||||||||||||||    
T  18102221 ttatatatgggttttctatcatgtgcaaatttgcaca 18102257  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 46803976 - 46803940
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    ||||||||||||||||||||||||||| |||||||||    
T  46803976 tttttctatcatgtgcaaatttgcacatattaaaaag 46803940  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 44916644 - 44916679
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaa 346  Q
    ||||||||||||||||||||||||||| ||||||||    
T  44916644 tttttctatcatgtgcaaatttgcacatattaaaaa 44916679  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 23553749 - 23553711
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  23553749 gatttttctatcatgtgcaaatttgcacatgttaaaaag 23553711  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 30206568 - 30206531
Alignment:
Q  112 tgaataattgatgtatctggttgatagtatagaccaaa 149  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  30206568 tgaataattgatgtatctggtttataatatagaccaaa 30206531  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 16667383 - 16667411
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  16667383 gatttttctatcatgtgcaaatttgcaca 16667411  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 47326883 - 47326919
Alignment:
Q  302 tatatatga-tttttctatcatgtgcaaatttgcaca 337  Q
    ||||||||| |||||||||||||||||||||||||||    
T  47326883 tatatatgagtttttctatcatgtgcaaatttgcaca 47326919  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 47341679 - 47341715
Alignment:
Q  302 tatatatga-tttttctatcatgtgcaaatttgcaca 337  Q
    ||||||||| |||||||||||||||||||||||||||    
T  47341679 tatatatgagtttttctatcatgtgcaaatttgcaca 47341715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 54016161 - 54016204
Alignment:
Q  303 atatatgatttttctatcatgtgcaaatttgcacaaattaaaaa 346  Q
    |||| ||||||||||||||||||||||||||||||  |||||||    
T  54016161 atatttgatttttctatcatgtgcaaatttgcacattttaaaaa 54016204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 32711302 - 32711245
Alignment:
Q  112 tgaataattgatgtatctggttgatagtatagaccaaacaaatcagttattcaatgaa 169  Q
    |||||||||||||||||||||  ||| ||||| ||||| | |||| ||||||||||||    
T  32711302 tgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 8165825 - 8165797
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  8165825 gatttttctatcatgtgcaaatttgcaca 8165797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 40497226 - 40497198
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  40497226 gatttttctatcatgtgcaaatttgcaca 40497198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 51339205 - 51339240
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||| ||||||||||||    
T  51339205 tttttctatcatgtgcaaatttgc-caaattaaaaag 51339240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 5870 - 5832
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  5870 gatttttctatcatgtgcaaatttgcacatgttaaaaag 5832  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 6017035 - 6016997
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  6017035 gatttttctatcatgtgcaaatttgcacatgttaaaaag 6016997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 31568286 - 31568250
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||  ||||||||    
T  31568286 tttttctatcatgtgcaaatttgcacatgttaaaaag 31568250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 12016843 - 12016811
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaa 343  Q
    ||||||||||||||||||||||||||| |||||    
T  12016843 tttttctatcatgtgcaaatttgcacatattaa 12016811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 16123457 - 16123429
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  16123457 gatttttctatcatgtgcaaatttgcaca 16123429  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 22704724 - 22704688
Alignment:
Q  302 tatatatga-tttttctatcatgtgcaaatttgcaca 337  Q
    ||||||||| |||||||||||||||||||||||||||    
T  22704724 tatatatgagtttttctatcatgtgcaaatttgcaca 22704688  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 45062375 - 45062343
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaa 343  Q
    ||||||||||||||||||||||||||| |||||    
T  45062375 tttttctatcatgtgcaaatttgcacatattaa 45062343  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 3168069 - 3168105
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||  ||||||||    
T  3168069 tttttctatcatgtgcaaatttgcacacgttaaaaag 3168105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 5875214 - 5875242
Alignment:
Q  309 gatttttctatcatgtgcaaatttgcaca 337  Q
    |||||||||||||||||||||||||||||    
T  5875214 gatttttctatcatgtgcaaatttgcaca 5875242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 39310787 - 39310823
Alignment:
Q  311 tttttctatcatgtgcaaatttgcacaaattaaaaag 347  Q
    |||||||||||||||||||||||||||  ||||||||    
T  39310787 tttttctatcatgtgcaaatttgcacatgttaaaaag 39310823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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