View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14939_low_5 (Length: 499)

Name: NF14939_low_5
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14939_low_5
NF14939_low_5
[»] chr5 (1 HSPs)
chr5 (16-483)||(2688085-2688552)
[»] chr7 (3 HSPs)
chr7 (146-474)||(22196943-22197272)
chr7 (146-474)||(22240549-22240878)
chr7 (120-446)||(39844907-39845235)
[»] chr3 (5 HSPs)
chr3 (120-473)||(42773644-42773999)
chr3 (197-408)||(52612788-52613000)
chr3 (212-456)||(1547621-1547866)
chr3 (355-411)||(44656976-44657032)
chr3 (353-401)||(55167506-55167554)
[»] chr6 (4 HSPs)
chr6 (146-474)||(20794288-20794616)
chr6 (217-470)||(14459316-14459570)
chr6 (354-401)||(33113403-33113450)
chr6 (358-414)||(2030995-2031051)
[»] chr8 (3 HSPs)
chr8 (191-414)||(5201117-5201341)
chr8 (146-383)||(27220312-27220550)
chr8 (353-414)||(10124218-10124279)
[»] chr1 (2 HSPs)
chr1 (353-401)||(38548074-38548122)
chr1 (353-395)||(12172359-12172401)
[»] chr4 (1 HSPs)
chr4 (197-337)||(7115020-7115160)


Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 2688085 - 2688552
Alignment:
Q  16 cagcaccacctacacctgctgtactgtcatgatagcaacactaaacccagcaaaaatgccagcccccagccgaaacacaatgaaaccggaagatagcagc 115  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2688085 cagcagcacctacacctgctgtactgtcatgacagcaacactaaacccagcaaaaatgccagcccgcagccgaaacacaatgaaaccggaagatagcagc 2688184  T
Q  116 agcattacctcaagagacactctcggggctccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacact 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688185 agcattacctcaagagacactctcggggcaccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacact 2688284  T
Q  216 ttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688285 ttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatca 2688384  T
Q  316 tccgcaagccattccggattttctcatttagtggtccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaa 415  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688385 tccgcaagccattccggattttcttatttagtggtccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaa 2688484  T
Q  416 gacatcaaagtcaaccaaacgttccgagccaaatcacaatggagaaaaagatgagaggtggtctctgt 483  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2688485 gacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggtggtctctgt 2688552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 146 - 474
Target Start/End: Complemental strand, 22197272 - 22196943
Alignment:
Q  146 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta 245  Q
    |||||||||||||||| |||| ||| ||| || ||| ||||  |  | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| |||    
T  22197272 ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta 22197173  T
Q  246 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 345  Q
    ||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||||| | | |    
T  22197172 gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactttcttaataa 22197073  T
Q  346 gtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagc 444  Q
      || |||| ||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||    
T  22197072 aaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggc 22196973  T
Q  445 caaatcacaatggagaaaaagatgagaggt 474  Q
    |||||||||||| || |||||||| |||||    
T  22196972 caaatcacaatgaaggaaaagatgtgaggt 22196943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 146 - 474
Target Start/End: Original strand, 22240549 - 22240878
Alignment:
Q  146 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta 245  Q
    |||||||||||||||| |||| ||| ||| || ||| ||||  |  | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| |||    
T  22240549 ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta 22240648  T
Q  246 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 345  Q
    ||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||||| | | |    
T  22240649 gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactttcttaataa 22240748  T
Q  346 gtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagc 444  Q
      || |||| ||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||    
T  22240749 aaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggc 22240848  T
Q  445 caaatcacaatggagaaaaagatgagaggt 474  Q
    |||||||||||| || |||||||| |||||    
T  22240849 caaatcacaatgaaggaaaagatgtgaggt 22240878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 446
Target Start/End: Complemental strand, 39845235 - 39844907
Alignment:
Q  120 ttacctcaagagacactctcgggg-ctccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacacttta 218  Q
    ||||||||| | ||| |||||||| | ||||||||| |||||| ||| ||| ||||||  |||  ||| || ||| | | ||||||| | || ||||||     
T  39845235 ttacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcactttt 39845136  T
Q  219 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 318  Q
    ||||||||||| | ||| |||||||| |||||  ||||||||||||| |  |||||||| || |||||||  |||||||  ||  ||||||| ||||| |    
T  39845135 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatcatac 39845036  T
Q  319 gcaagccattccggattttctcatttagtggt-ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaaga 417  Q
    |||| || ||||| ||||||| ||| |  | | ||||||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |||||  |    
T  39845035 gcaatcccttccgaattttcttattaatagatcccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaa 39844936  T
Q  418 catcaaagtcaaccaaacgttccgagcca 446  Q
    ||||| | |||||||||| |||| |||||    
T  39844935 catcacattcaaccaaacattcctagcca 39844907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 120 - 473
Target Start/End: Original strand, 42773644 - 42773999
Alignment:
Q  120 ttacctcaagagacactctcgggg-ctccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacacttta 218  Q
    ||||||| |||||||||| ||||| | |||| ||||||||||| | ||||| | || |  ||| ||||  | ||||| ||||||||| | ||||||||||    
T  42773644 ttacctcgagagacactcccggggacaccaaatccactcataaaataaacacggcgcacaatttgatctccctaacaaccacctccaagacaacacttta 42773743  T
Q  219 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 318  Q
    ||||||||||||| |||  |||| |  ||  | ||||| || |||||||| ||||||||||| |||||||  ||||||| |||||||||||||||||| |    
T  42773744 acctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagccttccaaattacccaaatcacggcctcccaaatcatac 42773843  T
Q  319 gcaagccattccggattttctcatttagtggt-ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaaga 417  Q
    |||| ||||| |||| |||||  || || | | |||||||||||||||||||||| || || | |||||| ||||| | ||||||||| |||||||||||    
T  42773844 gcaaaccattacggactttcttcttaagagatcccccactccaacactcccaatgaataaagaggtttggaggcataacaaaatgcaagtccaaccaaga 42773943  T
Q  418 catcaaagtcaaccaaacgttccgagccaaatcacaatggagaaaaagatgagagg 473  Q
    ||||||| |||||||||  ||||  |||||||| ||||| ||||| ||||| ||||    
T  42773944 catcaaactcaaccaaatattccacgccaaatcgcaatgaagaaagagatgggagg 42773999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 408
Target Start/End: Original strand, 52612788 - 52613000
Alignment:
Q  197 ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa 296  Q
    ||||||||| | ||||||||| |||| |||||| | ||| |||||   ||||||  ||||||| ||||| | |||||| || || ||||| || ||||||    
T  52612788 ccacctccatgacaacactttcaccttctccacaagctcatcccatggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaa 52612887  T
Q  297 accacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcatta 395  Q
    | |||  ||||||||||||||| ||| || ||||| || |||| || ||    ||||| |||||||||||||||||| || || || ||||| |||||||    
T  52612888 atcaccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatcaatcccccactccaacactcccaatgaattaacaaatttggcggcatta 52612987  T
Q  396 taaaatgcaaatc 408  Q
    |||||| ||||||    
T  52612988 taaaattcaaatc 52613000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 456
Target Start/End: Complemental strand, 1547866 - 1547621
Alignment:
Q  212 cactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaa 311  Q
    |||||| ||||||||||| | ||| |||||||| |||||  ||||||||||||| |   ||||||| || |||||||  |||||||  ||  |||||||     
T  1547866 cacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggccatttctcgccttccaaatcacccaaattaccacctcccat 1547767  T
Q  312 atcatccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatcca 410  Q
    ||||| ||||| || ||||  |||||||  || |  | ||||| ||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |    
T  1547766 atcatacgcaatcccttccaaattttcttgttaatagatcccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatcta 1547667  T
Q  411 accaagacatcaaagtcaaccaaacgttccgagccaaatcacaatg 456  Q
    ||||  |||||| | |||||||||| |||| |||||  ||||||||    
T  1547666 accacaacatcacattcaaccaaacattcctagccatgtcacaatg 1547621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 44656976 - 44657032
Alignment:
Q  355 actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaa 411  Q
    |||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||    
T  44656976 actccagcactcccaatgaataaataaatttgggggcattataaaattcaaatccaa 44657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 55167506 - 55167554
Alignment:
Q  353 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 401  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  55167506 ccactccaacactcccaatggataaataaatttggaggcattataaaat 55167554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 146 - 474
Target Start/End: Complemental strand, 20794616 - 20794288
Alignment:
Q  146 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta 245  Q
    |||||||||||||||| |||| ||  ||| || ||| |||| || || || ||| ||||| | || |||||||||||||||||||| ||| ||| | |||    
T  20794616 ccaactccactcataaaacaagcaaaccgtagaatttgatctacctagcaaccatctccaagacatcactttaacctcctccactaactcatcctatcta 20794517  T
Q  246 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 345  Q
    ||| || ||||||||||| |||| ||||||||||| |||||||  ||||||| | || ||||| |||||||||||||  | ||||| | ||||| ||  |    
T  20794516 gcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcccgacctcc-aaatcatccgcaactcgttccgaactttcttatgaa 20794418  T
Q  346 gtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagc 444  Q
      || |||| ||||||||||||||||||||| || | ||| |  ||||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||    
T  20794417 aaggacccccactccaacactcccaatggataaaaaggttcgaaggcattataaaattcaaatccaaccaagacatcaaactcaaccaaacattccgggc 20794318  T
Q  445 caaatcacaatggagaaaaagatgagaggt 474  Q
    |||||||||||| || || ||||| |||||    
T  20794317 caaatcacaatgaaggaagagatgtgaggt 20794288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 470
Target Start/End: Complemental strand, 14459570 - 14459316
Alignment:
Q  217 taacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcat 316  Q
    |||||||||| || | ||| |||||||||||| |  |||||||||||||||  ||||| |||||   |||||  ||||||||| |  ||||||| |||||    
T  14459570 taacctcctcaacaagctcatcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcat 14459471  T
Q  317 ccgcaagccattccggattttctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaa 415  Q
    ||||||||| ||||| || |||| ||  | || |||||  |||||||| ||||||||||| || || || || ||||| | ||||| |||||| ||||||    
T  14459470 ccgcaagcccttccgaatcttcttatgaattgatcccctgctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaa 14459371  T
Q  416 gacatcaaagtcaaccaaacgttccgagccaaatcacaatggagaaaaagatgag 470  Q
    | |||||||   ||||| || |||   ||||| || ||||| |||||||||||||    
T  14459370 gtcatcaaatgtaaccacacattctttgccaagtcgcaatgaagaaaaagatgag 14459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 33113403 - 33113450
Alignment:
Q  354 cactccaacactcccaatggatgaataagtttgggggcattataaaat 401  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  33113403 cactccaacactcccaatggataaataaatttggaggcattataaaat 33113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 2030995 - 2031051
Alignment:
Q  358 ccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 414  Q
    |||||||||||||||||| ||||| || || ||||||| ||||| ||||||||||||    
T  2030995 ccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaacca 2031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 191 - 414
Target Start/End: Original strand, 5201117 - 5201341
Alignment:
Q  191 taacatccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaag 290  Q
    ||||| ||| ||||||  |||||| |||||||||||||||| ||| |||||||| ||| ||||||||||||||||  |  ||||||| || ||||||| |    
T  5201117 taacaaccatctccacaacaacaccttaacctcctccactaactcatcccaccttgcaataacattattaaaaataaacccatttctcgccttccaaatg 5201216  T
Q  291 acccaaaccacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtcccca--ctccaacactcccaatggatgaataagtttggg 388  Q
    |||||||   |||| | ||||||||| | ||| || || |||||||||| | ||| |  | ||||    |||||| |||||||||| ||||||||| ||     
T  5201217 acccaaattgcggcttgccaaatcattctcaaacccttacggattttctta-ttaatattacccatcgcccaacattcccaatggacgaataagttgggt 5201315  T
Q  389 ggcattataaaatgcaaatccaacca 414  Q
    ||||||| ||||| ||||||||||||    
T  5201316 ggcattacaaaattcaaatccaacca 5201341  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 383
Target Start/End: Complemental strand, 27220550 - 27220312
Alignment:
Q  146 ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta 245  Q
    |||| |||||||||||||||||||||| ||| ||||  |||  | ||| | ||| ||||| | || ||| || ||||||||||||| ||| ||||||       
T  27220550 ccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacctcctccactaactcgtcccacaat 27220451  T
Q  246 gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta 345  Q
    || ||  ||| ||| ||||| |  |||||||| ||  ||||||  | ||||| | | |||||||| ||||| ||||| || ||||||||||||| ||| |    
T  27220450 gcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattga 27220351  T
Q  346 gtggtcc-ccactccaacactcccaatggatgaataagt 383  Q
      || || ||||||||||||||||||||||| |||||||    
T  27220350 tcgggcctccactccaacactcccaatggataaataagt 27220312  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 10124279 - 10124218
Alignment:
Q  353 ccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 414  Q
    |||||||||||||||||||| || |  |||||||| ||||||||||||| ||||| ||||||    
T  10124279 ccactccaacactcccaatgaataaccaagtttggaggcattataaaattcaaattcaacca 10124218  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 38548122 - 38548074
Alignment:
Q  353 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 401  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  38548122 ccactccaacactcccaatggataaataaatttggaggcattataaaat 38548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 12172401 - 12172359
Alignment:
Q  353 ccactccaacactcccaatggatgaataagtttgggggcatta 395  Q
    ||||||||||||||||||||||| || |||||||| |||||||    
T  12172401 ccactccaacactcccaatggataaacaagtttggaggcatta 12172359  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 7115020 - 7115160
Alignment:
Q  197 ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa 296  Q
    ||||||||||| ||  || || ||||||||||||| ||| |||||||||||  |  |||| || ||||| ||| ||||||| ||  ||||||  ||||||    
T  7115020 ccacctccacgacataaccttgacctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaa 7115119  T
Q  297 accacggcctcccaaatcatccgcaagccattccggatttt 337  Q
    | |||  |||||||||||| || ||  || |||||||||||    
T  7115120 atcacaacctcccaaatcaacctcattcccttccggatttt 7115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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