View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14939_low_6 (Length: 462)
Name: NF14939_low_6
Description: NF14939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14939_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 35258910 - 35258578
Alignment:
| Q |
18 |
agaagaggaagaaaagttgtggaattttatgttggaggaagcttcaaagatgcaaagagaattgaggggtgaggatttggatcatgaaacaatgatgaag |
117 |
Q |
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| T |
35258910 |
agaagaggaagaaaagttgtggaattttatgttggaggaagcttcaaagatacaaagagaattgaggggtgaggatttggatcatgaaacaatgatgaag |
35258811 |
T |
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| Q |
118 |
tttctgagtcctgtttctgtggagattgaaggggatcaatatgaggaatatgagaaaactgatgcttattacaaaaagcatataaatcttgcaccttaca |
217 |
Q |
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| T |
35258810 |
tttctgagtcctgtttctgtggagattgaaggggatcaatatgaggaatatgagaaaactgatgcttattacaaaaagcatataaatcttgcaccttaca |
35258711 |
T |
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| Q |
218 |
attcacttcttctgtctaactatgcacagtttctcttccttgtcatgaaggacaatgatgggtgagttctcataaaccaattttgtattacaatttggct |
317 |
Q |
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| T |
35258710 |
attcacttcttctgtctaactatgcacagtttctcttccttgtcatgaaggacaatgatgggtgagttctcataaaccaattatgtattacaatttggct |
35258611 |
T |
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| Q |
318 |
agtattagatgttgttgctacatggttttaaat |
350 |
Q |
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| T |
35258610 |
agtattagatgttgttgctacatggttttaaat |
35258578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 347 - 458
Target Start/End: Complemental strand, 35258556 - 35258445
Alignment:
| Q |
347 |
aaatgcggttgaagctgttcatagacttcaaaatcctttatattgtagttgcaattttgttgttacagcctgctaattaaaaccatgttctgtattaaga |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35258556 |
aaatgcggttgaagctgttcatagacttcaaaatcctttatattgtagttgcaattttgttgttacagcctgctaattaaaaccatgttctgtattaaga |
35258457 |
T |
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| Q |
447 |
gaataatctacc |
458 |
Q |
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| T |
35258456 |
gaaaaatatacc |
35258445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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