View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_11 (Length: 351)
Name: NF1493_high_11
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 47955184 - 47954861
Alignment:
| Q |
11 |
cacagactgcatttcaactacaaatacacctactcatcctgaatcctaaatnnnnnnnnnncagtagctacctctttgcaggtgctgtggtgtgctgcga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47955184 |
cacagactgcatttcaactacaaatacacctactcatcctgaatcctaaa-aaaaaaaaaacagtagctacctctttgcaggtgctgtggtgtgctgcga |
47955086 |
T |
|
| Q |
111 |
ggaggtcattgtatctgatttgtagatcagagaattgagcttgcaatttttcatattcagagattgaaggacaacttaatttctgttgaatgaacctgcc |
210 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47955085 |
ggaggtcattatatctgatttgtagatcagaaaattgagcttgcaatttttcatattcagagattgaaggacaacttaatttctgttgaatgaacctgcc |
47954986 |
T |
|
| Q |
211 |
caaccaaccaacaacctcgtcatcttacaatgctcaaatcaaatcaaagaagggaggaaaggaacatactcaagagcagaagaaggtttgtcgttttgtt |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47954985 |
caaccaaccaacaacctcgtcatcttacaatgctcaaatcaaatcaaagaagggaggaaaggaacatactcaagagcagaagaaggtttgtcgttttgtt |
47954886 |
T |
|
| Q |
311 |
catataaagaaacaagaactgcaac |
335 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
47954885 |
catataaagaaacaagaactgcaac |
47954861 |
T |
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