View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_13 (Length: 345)
Name: NF1493_high_13
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 3804053 - 3804377
Alignment:
| Q |
13 |
actttcttcaccattggcttgatctatagcatttttaagcatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaa |
112 |
Q |
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| T |
3804053 |
actttcttcaccattggattgatctatagcattttcaaacatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaa |
3804152 |
T |
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| Q |
113 |
tgaatgaacaatcatgcatgcatcagtcttaaagtagaataactagaaataaatgcacataatgaaggagaaagtgcatattaaaagaaggaatatgaaa |
212 |
Q |
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| T |
3804153 |
tgaatgaacaatcatgcatgcatcagtcttaaagtagaataactagaaataaatgcacataatgaagaagaaaatgcatatt-aaagaaggaatatgaaa |
3804251 |
T |
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| Q |
213 |
gaaaagtgaaatatacgaatatttggtaggaatataatgtttttctatcataaccgttgtttcttcaccatttttatgaaccggaatcccaggaaaacca |
312 |
Q |
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| T |
3804252 |
gcaaagtgaaacatacgaatatttggtaggaatataatgtttttctatcataaccgttgtttcttcaccatttttgtgaaccggaatcccaggaaaacca |
3804351 |
T |
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| Q |
313 |
cctccactattcttcttcctatgata |
338 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
3804352 |
cctccactattcttcttcttatgata |
3804377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 26913906 - 26913774
Alignment:
| Q |
13 |
actttcttcaccattggcttgatctatagcatttttaagcatgcaatgttcctccaagaaagccagcaacttatctcgactgtaccaacaagttgattaa |
112 |
Q |
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||||||||||||||||||||||||| | ||||||| | |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
26913906 |
actttcttcaccattggcttgatctttggcattttcacgcatgcaaaactcctccaagaaatccaacaacttatctcgactgtaccaacaagttgattaa |
26913807 |
T |
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| Q |
113 |
tgaatgaacaatcatgcatgcatcagtcttaaa |
145 |
Q |
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| T |
26913806 |
taaatgaacaatcatgcatgcataagtcttaaa |
26913774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 329
Target Start/End: Complemental strand, 26913751 - 26913579
Alignment:
| Q |
142 |
taaagtagaataactagaaataaatgcacataatgaaggagaaagtgcatattaaaagaaggaatatgaaagaaaagtgaaatatacgaatatttggtag |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||| ||||| ||||| ||||||| ||| |
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| T |
26913751 |
taaagtagaataactagaaataaatgcacataatgaagga--------atatt-aaagtaggaatatgaaaggaaaatgaaacatacgtatatttgctag |
26913661 |
T |
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| Q |
242 |
gaatataatgtttttctatcataaccgttgtttcttcaccatttttatgaaccggaatcccaggaaaaccacctccactattcttctt |
329 |
Q |
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| T |
26913660 |
g-----aatgttctt-aatcataaccgttgtttctttaccatccttctgaaccggaaccaatggaaaaccacctccactattcttctt |
26913579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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