View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_14 (Length: 344)
Name: NF1493_high_14
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 96 - 328
Target Start/End: Original strand, 4050943 - 4051175
Alignment:
| Q |
96 |
ctctcgcgcatttgttccctgcaacacttaaatattatagataatacggaaaagtatgaaataccaatatagacacagaccgttgagagtcccacaatga |
195 |
Q |
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| T |
4050943 |
ctctcgcgcatttgttccctgcaacacttaaatattatagagaatacggaaaagtatgaaataccaatatagacacagaccgtcaagagtcccaaaatga |
4051042 |
T |
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| Q |
196 |
atgaactaaggtttgaatataattttataagtggagacaatattgtcactctacaagccagttttataggggttgggttagaccaatgccaaattctaag |
295 |
Q |
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| T |
4051043 |
atgagctaaggtttgaatataattttataagtagagacaatattgtcactctacaagccggttttataggggttgggttagaccaatgccaaattctaag |
4051142 |
T |
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| Q |
296 |
aaccggacatgacataaacacggacatgtaaac |
328 |
Q |
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| T |
4051143 |
aaccggacacgacataaacacggacatgtaaac |
4051175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4050848 - 4050899
Alignment:
| Q |
1 |
agagataagtagttgtaaataatgtgtgaagaagttaataaaattaaggtac |
52 |
Q |
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| T |
4050848 |
agagataagtagttgtaaataatgtgtgaagaagttaataaaattaaggtac |
4050899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 36181295 - 36181337
Alignment:
| Q |
239 |
tgtcactctacaagccagttttataggggttgggttagaccaa |
281 |
Q |
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| T |
36181295 |
tgtcactctacaaaccagttttataggggttgagttaggccaa |
36181337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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