View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_high_17 (Length: 313)
Name: NF1493_high_17
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_17 |
 | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0046 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 51844759 - 51845016
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| |||||||||||| |
|
|
| T |
51844759 |
atatttattctgtttcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaatcataaagaggatctaattattcatgttatct |
51844858 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
218 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51844859 |
caataatctaatataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaataacataggctcgtctcactttt |
51844958 |
T |
|
| Q |
219 |
gcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaacctt |
276 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
51844959 |
gcatttcaaacctcaaccaacttcacgctcaaccatgagggcttccgtaattaacctt |
51845016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 14114462 - 14114300
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
||||| ||| || |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14114462 |
atattaattttgtttcaaatgtaccattcct-tggcatgatagtcatgcttgcacaatcggaaagtaatcataaaaatggtctaattgttcatgttatct |
14114364 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14114363 |
caataatctaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
14114300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 120 - 312
Target Start/End: Original strand, 28146253 - 28146444
Alignment:
| Q |
120 |
aataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcacttttg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146253 |
aataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt-aatcctttaaaatggcataggctcgtctcacttttg |
28146351 |
T |
|
| Q |
220 |
catttcaaacatttaccaacttcacgctcaaccataagggcatccataattaaccttatttgaattaaactcttactagaataatctacccac |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
28146352 |
catttcaaacatttatcaacttcacgctcaaccataagggcatccataattaaccttatttgaattaaactcttactagaataagcttcccac |
28146444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 34255169 - 34254913
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
34255169 |
atatctattctgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
34255070 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
218 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255069 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
34254970 |
T |
|
| Q |
219 |
gcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaacct |
275 |
Q |
| |
|
|||||| |||| | |||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
34254969 |
gcattttaaacctcaaccaacttcatgctcaaccataagtgcatctataattaacct |
34254913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 26620093 - 26619930
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26620093 |
atatctattctgtttcaaatgtaccattcatatggtatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatct |
26619994 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619993 |
caataatctaacataattataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
26619930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 26726006 - 26725843
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26726006 |
atatctattctgtttcaaatgtaccattcatatggtatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatct |
26725907 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26725906 |
caataatctaacataattataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
26725843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 5249678 - 5249516
Alignment:
| Q |
20 |
tatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatctc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || | |||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
5249678 |
tatttattctgtttcaaatgtaccattcatatggcataatagtcatgcttgcataaaagacaagtaatcataaaaatggtctaattattgatgttatctc |
5249579 |
T |
|
| Q |
120 |
aataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5249578 |
aataatctaacatattcataatcgatccccaaaggtgggttctaagctaaaggaactcacctt |
5249516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 28223051 - 28223201
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
28223051 |
atatttattctgtttcaaatataccattcatatgacatgatagttatgcttgcacaattggcaagtaatcataaaaatggtctaattattcatgttatct |
28223150 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaa |
169 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28223151 |
cgataatctaacataatcataattgatccccaaatgtgggttctaagctaa |
28223201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 8520189 - 8520352
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||| ||| |||||||||||||||| || ||||||||| |
|
|
| T |
8520189 |
atatttattctacttcaaatgtaccattcatatggcataatagtcatgcttgcacaaaagtcaaaaaatcataaaaatggtctaattatttatgttatct |
8520288 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8520289 |
caataatctaacctaatcataatcgatccccaaaggtgcgttctaagctaaaggaactcacctt |
8520352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 29934263 - 29934100
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
29934263 |
atatctattctgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatct |
29934164 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29934163 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctt |
29934100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 33295846 - 33295684
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | || |||| ||| |||| |||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
33295846 |
atatttattctacttcaaatgtaccattcatatggcataacagacatgtttgtacaaaaggcaagtaatcataaaa-tggtctaattattcatgttatct |
33295748 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33295747 |
taataatgtagcataatcataatcgatctccaaaggtgggttctaagctaaaggaactcacctt |
33295684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 28145540 - 28145625
Alignment:
| Q |
44 |
attcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatctcaataaagtaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28145540 |
attcatatggcatgatagtcatgcttgcacaatcggcgagtaattctaaaaatggtctaattattcatgttatctcaataaagtaa |
28145625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 5130636 - 5130574
Alignment:
| Q |
25 |
attctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaat |
87 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5130636 |
attctgtttcaaatgtaccattcatatggtatgatagtcatgcttgcacaatcggcaagtaat |
5130574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 5130577 - 5130527
Alignment:
| Q |
132 |
taatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5130577 |
taatcataattgatccccaaatgtgggctctaagctaaaggaactcacctt |
5130527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 19803518 - 19803795
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
19803518 |
atatctattctgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
19803617 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
218 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19803618 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
19803717 |
T |
|
| Q |
219 |
gcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaaccttatttgaattaaactcttact |
296 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
19803718 |
gcatttcaaacctcaaccaacttcatgctcaaccataagggcatttataattaaccttgtttgaaataaactcttact |
19803795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 4341690 - 4341853
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||| |
|
|
| T |
4341690 |
atatttattctgtttcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattatccatattatct |
4341789 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4341790 |
caataatctaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
4341853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 42785616 - 42785453
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
42785616 |
atatctattctgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatct |
42785517 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42785516 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctt |
42785453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 21958192 - 21958048
Alignment:
| Q |
33 |
tcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatctcaataaagtaacat |
132 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| | |||| ||| |||||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
21958192 |
tcaaatgtacctttcatatggcataatagtcatgcttgcacaaaagacaagaaatcataaaaaaggtctaattattcatgttatctcaataatataacat |
21958093 |
T |
|
| Q |
133 |
aatcataattgatccccaaaggtgggttctaagctaaaggaactc |
177 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21958092 |
aatcataactgatccccaaaggtgggctctaagctaaaggaactc |
21958048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 20810090 - 20809822
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
20810090 |
atatatattctgtttcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaggtaatcataaaaatggtctaattattcatgttatct |
20809991 |
T |
|
| Q |
119 |
caata------------aagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggct |
206 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20809990 |
caatatctaacataataatctaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatagcataggct |
20809891 |
T |
|
| Q |
207 |
cgtctcacttttgcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaacct |
275 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
20809890 |
cgtctcacttttgcatttcaaacctaaaccaacttcacactcaaccatgagggcatccgtaattaacct |
20809822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 5558362 - 5558525
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| ||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
5558362 |
atatctattctgtttcaaatgtatcattcatatgacatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
5558461 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5558462 |
cattaatctaacataatcataatccattcccaaaggtgggttctaaactaaaggaactcacctt |
5558525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 5577169 - 5576966
Alignment:
| Q |
72 |
acaatcggcaagtaattctaaaaatggtctaattgttcatgttatctcaataaagtaacataatcataattgatccccaaaggtgggttctaagctaaag |
171 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5577169 |
acaatcggcatgtaatcctaaaaatggtctaattattcatgttatgtcaataatctaacataatcataattgatccccaaaggtggattctaagctaaag |
5577070 |
T |
|
| Q |
172 |
gaactcacctttaatcctttaaaatggcataggctcgtctcacttttgcatttcaaacatttaccaacttcacgctcaaccataagggcatccataatta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5577069 |
gaactcacctttaatcctttaaaatggcataggctcgtctcacttttgcatttcaaacctcaaccaacttcacgctcaaccataagggcatccataatta |
5576970 |
T |
|
| Q |
272 |
acct |
275 |
Q |
| |
|
|||| |
|
|
| T |
5576969 |
acct |
5576966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 1506526 - 1506689
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
1506526 |
atatctattctgtttcaaatgtaccattcatatggtatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatct |
1506625 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1506626 |
caataatctaacataattataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
1506689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 4852985 - 4853147
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
4852985 |
atattaattctgtttcaaatgtaccattcat-tggcatgatagtcatgcttgcacaatcggcaagtaatcataaaaatggtctaattattcatgttatct |
4853083 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853084 |
caataatctaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
4853147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 14190902 - 14191064
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
14190902 |
atatttattctacttcaaatgtaccattcatatggcataatagtcatgcttgcacaaaaggcgagtaatcataaaaatggtctaattattcatgttatct |
14191001 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacct |
181 |
Q |
| |
|
|||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14191002 |
caataatctagcataatcataatcgatctccaaaggtgggttctaagctaaaggaactcacct |
14191064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 13713655 - 13713823
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatg-----atagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgt |
113 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||| ||||| ||||| | |
|
|
| T |
13713655 |
atatctattttgtttcaaatgtaccattcatatggtatggtatgatagtcatgcttgcacaatcggcaggtaatcataaaaatggtttaattattcatat |
13713754 |
T |
|
| Q |
114 |
tatctcaataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
13713755 |
tatctcaataatctaacataatcataattgatccccaaaggtgggttataagcgaaaggaactcacctt |
13713823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 2894263 - 2894100
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
2894263 |
atatctattctgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatct |
2894164 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2894163 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctt |
2894100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5577981 - 5577931
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgctt |
69 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5577981 |
atatttattttgtttcacatgtaccattcatatggcatgatagtcatgctt |
5577931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 26422 - 26145
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| |||| || |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
26422 |
atatctattttgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
26323 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
218 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26322 |
cattaatctaacataatcataatccattcccaaaggcgggttctaagctaaaggaactcacctttagtcctttaaaatggcataggctcgtctcactttt |
26223 |
T |
|
| Q |
219 |
gcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaaccttatttgaattaaactcttact |
296 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
26222 |
gcatttcaaacctcaaccaatttcatgctcaaccataagggcatctataattaaccttgtttgaaataaactcttact |
26145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 14530304 - 14530048
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| |||| || |||||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
14530304 |
atatctattatgtttcaaatgtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
14530205 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
218 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14530204 |
cattaatctaacataatcataatccattcccaaaggtgggttctaagctaaaggaactcacctttaatcctttaaaatggcataggctcgtctcactttt |
14530105 |
T |
|
| Q |
219 |
gcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaacct |
275 |
Q |
| |
|
|||||| |||| | |||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
14530104 |
gcattttaaacctcaaccaacttcatgctcaaccataagtgcatctataattaacct |
14530048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 19451779 - 19451843
Alignment:
| Q |
169 |
aaggaactcacctttaatccttt-aaaatggcataggctcgtctcac---ttttgcatttcaaac |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| | |||||||| ||||||||||||||| |
|
|
| T |
19451779 |
aaggaactcacctttaatcctttaaaaatagcatagacccgtctcacttattttgcatttcaaac |
19451843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 23549 - 23699
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
23549 |
atatttattctgtttcaaatataccattcatatgacatgatagttatgcttgcacaattggcaagtaatcataaaaatggtctaattattcatgttatct |
23648 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaa |
169 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23649 |
cgataatctaacataatcataattgatccccaaatgtgggttctaagctaa |
23699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 2743035 - 2742872
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||| | |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
2743035 |
atatctattctgtttcaaaagtatcattcatatggcatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggtctaattattcatgttatct |
2742936 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| |||| |||||||||||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2742935 |
cattaaactaacataatcatgatccattcccaaaggtgggttctaagctaaaggaactcacctt |
2742872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 41528984 - 41529147
Alignment:
| Q |
19 |
atatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatct |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| ||| ||||||||||||||||| | |||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
41528984 |
atatctattctgtttcaaatgtatcattcatatgacatagtagtcatgcttgcacaaaagacaagaaatcataaaaatggcctaattattcatgttatct |
41529083 |
T |
|
| Q |
119 |
caataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
|| ||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41529084 |
cattaatctaacataatcataatccattcccaaaggtgggttctaaactaaaggaactcacctt |
41529147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 37368586 - 37368425
Alignment:
| Q |
20 |
tatttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaatcggcaagtaattctaaaaatggtctaattgttcatgttatctc |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || || | |||||||| |||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
37368586 |
tatttattctacttcaaatgtaccattcatatggcataacagacacgtttgcacaaaaggcaagtaatcataaaa-tggtctaattattcatgttatctt |
37368488 |
T |
|
| Q |
120 |
aataaagtaacataatcataattgatccccaaaggtgggttctaagctaaaggaactcacctt |
182 |
Q |
| |
|
||||| || |||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
37368487 |
aataatctagcataatcataatcgatctccaaaggtgggttcaaagctaaaggaactcacctt |
37368425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 39699 - 39622
Alignment:
| Q |
199 |
cataggctcgtctcacttttgcatttcaaacatttaccaacttcacgctcaaccataagggcatccataattaacctt |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||| | | ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
39699 |
cataggctcgtctcactttcgcatttcaatcctcaaccaacttcacgctcaaccatgagggcatccgtaattaacctt |
39622 |
T |
|
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Target: scaffold0046 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 90979 - 91031
Alignment:
| Q |
23 |
ttattctgattcaaatgtaccattcatatggcatgatagtcatgcttgcacaa |
75 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
90979 |
ttattctgtttcaaatgtaccattcatatggcataataggaatgcttgcacaa |
91031 |
T |
|
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