View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_19 (Length: 309)
Name: NF1493_high_19
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 6019018 - 6019118
Alignment:
| Q |
194 |
gtagtctgggtttacttcattccgcagtttcactcacctgcaatcatcttttctgcaagtaagttattcattcattcaattcaattctctctttcattca |
293 |
Q |
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| T |
6019018 |
gtagtctgggtttacttcattccgcagtttcactcacctgcaatcatcttttctgcaagtaagttattcattcattcaattcaattctctctttcattca |
6019117 |
T |
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| Q |
294 |
t |
294 |
Q |
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| T |
6019118 |
t |
6019118 |
T |
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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 6018837 - 6018936
Alignment:
| Q |
18 |
ctttcactattcattgtgattgtgattcaattaatcgaaatcagaaatgggggatcttgaaaaaatgggaagagaactcaaatgtccaatctggtaccaa |
117 |
Q |
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| T |
6018837 |
ctttcactattcattgtgattgtgattcaattaatcgaaatcagaaatgggggatcttgaaaaaatgggaagagaactcaaatgtccaatctggtaccaa |
6018936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 20944708 - 20944763
Alignment:
| Q |
62 |
aaatgggggatcttgaaaaaatgggaagagaactcaaatgtccaatctggtaccaa |
117 |
Q |
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| T |
20944708 |
aaatggtggatcttgaaaacatgggcagagaactcaaatgtccaatctggtaccaa |
20944763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 38009694 - 38009650
Alignment:
| Q |
211 |
cattccgcagtttcactcacctgcaatcatcttttctgcaagtaa |
255 |
Q |
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| T |
38009694 |
cattctgcagtttcactcacccggaatcaacttttctgcaagtaa |
38009650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 38009830 - 38009798
Alignment:
| Q |
81 |
aatgggaagagaactcaaatgtccaatctggta |
113 |
Q |
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| T |
38009830 |
aatgggcagagaactcaaatgtccaatctggta |
38009798 |
T |
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