View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_2 (Length: 556)
Name: NF1493_high_2
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 10012224 - 10011685
Alignment:
| Q |
1 |
agtgatatgctacttatgaatatgaatgatatgaaacagaaaagtattcacagggaagcagaagcattagtgtttgaagtgaaggcatatatggcttaac |
100 |
Q |
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| T |
10012224 |
agtgatatgttacttatgaatatgaatgatatgaagcagaaaagtattcatagggaagcagaagcattagtgtttgaagtgaaggcatatatggcttaac |
10012125 |
T |
|
| Q |
101 |
aagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaaggaagcatcaatagtgtcatgtggg |
200 |
Q |
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| T |
10012124 |
aagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaaggaagcatcaatagtgtcatgtggg |
10012025 |
T |
|
| Q |
201 |
aagacacagtgtatggttcatttgaattagtcaacatagtaatgtatcaaaagcatgttatgataatcttctttgaatagaatagaaggaaaattgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10012024 |
aagacacagtgtatggttcatttgaattagtcaacatagtaatgtatcaaaagcatgttatgataatcttctttgaatagaatagaaggaaatttgaaaa |
10011925 |
T |
|
| Q |
301 |
agaagtcttcacctgaacagcaatattgaaaattggtaatgtatgattaactcacacaaaaagcatgcaatgcaagtggggtaatgtattggagtgtgct |
400 |
Q |
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| T |
10011924 |
agaagtcttcacctgaacagcaatattgaaaattggtaatgtatgattaactcacacaaaaagcatgcaatgcaagtggggtaatgtattggagtgtgct |
10011825 |
T |
|
| Q |
401 |
catatactaattgtgaagattcttatgtgtagggccaagtccctacataggtgaaaatatctactgtgcattcatcatcatgctactcccactaaacctt |
500 |
Q |
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| T |
10011824 |
catatactaattgtgaagattcttatgtgtagggccaagtccctacataggtgaaaatatctactgtgcattcatcatcatgctactcccactaaaccat |
10011725 |
T |
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| Q |
501 |
ggatttggatattcctcttctattagccctaccaataaat |
540 |
Q |
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| T |
10011724 |
ggatttggatattcctcttctattagccctaccaataaat |
10011685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 54 - 362
Target Start/End: Complemental strand, 42171531 - 42171216
Alignment:
| Q |
54 |
ggaagcagaagcattagtgtttgaagtgaaggcatatatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctc |
153 |
Q |
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| T |
42171531 |
ggaagcataagcattagtgtttgaagtgaaggcatatatggcttgacatgtggaaaaggaaagtggaatatgctttactagtttcatgcaagtaatcttc |
42171432 |
T |
|
| Q |
154 |
agagacaaagaaataccactaaggaagcatcaatagtgtcatgtgggaagacacagtgtatggttcatttgaattagtc-------aacatagtaatgta |
246 |
Q |
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| T |
42171431 |
agagacaaagaaatactacagagggagcatcaatagtgtcatgtgggaagatacagtgtgtggtacatttgaattagtcaacagtcaacatagtaatgta |
42171332 |
T |
|
| Q |
247 |
tcaaaagcatgttatgataatcttctttgaatagaatagaaggaaaattgaaaaagaagtcttcacctgaacagcaatattgaaaattggtaatgtatga |
346 |
Q |
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| T |
42171331 |
tcaaatgcatgttatgataatctcctttgaatagaacagaaggaaaattgaaaaagaagtcttcacctgaacagcaatattgaaaattggtgatgtatga |
42171232 |
T |
|
| Q |
347 |
ttaactcacacaaaaa |
362 |
Q |
| |
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|||||||||||||||| |
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| T |
42171231 |
ttaactcacacaaaaa |
42171216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 39309847 - 39309789
Alignment:
| Q |
290 |
aaaattgaaaaagaagtcttcacctgaacagcaatattgaaaattggtaatgtatgatt |
348 |
Q |
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| T |
39309847 |
aaaattgaaaaacaagtcttcacctgaacagtaatattgaaaattggtgatgtatgatt |
39309789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 56181916 - 56181880
Alignment:
| Q |
221 |
tttgaattagtcaacatagtaatgtatcaaaagcatg |
257 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
56181916 |
tttggattagtcaacatagtaatgtatcaaaagcatg |
56181880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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