View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_high_24 (Length: 265)
Name: NF1493_high_24
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 43977848 - 43978004
Alignment:
| Q |
5 |
gtgagatgaataaacaaaaagaaatgacatttcctgcaaataaaataacattccatatattagcaaaaataaaattgtatggtgatattctaaagcgtgt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43977848 |
gtgacatgaataaacaaaaagaaatggcatttcctgcaaataaaataacattccatatattagcaaaaataaaattgtatggtgatattctaaagcgtgt |
43977947 |
T |
|
| Q |
105 |
taaattaattctttcannnnnnnccctacaatcttgatgtcaaattagattatccct |
161 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43977948 |
taaattaattctttcatttttttccctacaatcttgatgtcaaattagattatccct |
43978004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 43978136 - 43978243
Alignment:
| Q |
146 |
aaattagattatccctgc------ttgcaaactctaactcaaactcatttaaagaattgatctctctccacatataagtcaagattgaagcattcaaata |
239 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978136 |
aaattagattatccctgcatgcagttgcaaactctaactcaaactcatttaaagaattgatctctctccacatataagtcaagattgaagcattcaaata |
43978235 |
T |
|
| Q |
240 |
tttatcac |
247 |
Q |
| |
|
|||||||| |
|
|
| T |
43978236 |
tttatcac |
43978243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University