View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1493_high_26 (Length: 257)
Name: NF1493_high_26
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 5674039 - 5673814
Alignment:
| Q |
18 |
aaaccaaatacccaaa-cccgacctttatactcgaggaatagccatcatttgcttccccccacaatgatcgtaaccgaccacctacctaatataaccacc |
116 |
Q |
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| T |
5674039 |
aaaccaaatacccaaaacccgacctttctactcgagggatagccatcatttgcttccccccacaatgatcgtaaccgaccacctacctaatataaccacc |
5673940 |
T |
|
| Q |
117 |
tttcttccatacctagctactaacatcttataccacagacttccttgatccataaacatcctctaacaccatttatctaacaatgacaaattaaattcac |
216 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5673939 |
tttcttccatacctagctactgatatcttataccacagacttccttgatccaaaaacatcctctaacaccatttatctaacaatgacaaattaaattccc |
5673840 |
T |
|
| Q |
217 |
gaattttatgaactcccagtcctttg |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5673839 |
gaattttatgaactcccagtcctttg |
5673814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 5699091 - 5698866
Alignment:
| Q |
18 |
aaaccaaatacccaaa-cccgacctttatactcgaggaatagccatcatttgcttccccccacaatgatcgtaaccgaccacctacctaatataaccacc |
116 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5699091 |
aaaccaaatacccaaaacccgacctttctactcgagggatagccatcatttgcttccccccacaatgatcgtaaccgaccacctacctaatataaccacc |
5698992 |
T |
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| Q |
117 |
tttcttccatacctagctactaacatcttataccacagacttccttgatccataaacatcctctaacaccatttatctaacaatgacaaattaaattcac |
216 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5698991 |
tttcttccatacctagctactgatatcttataccacagacttccttgatccaaaaacatcctctaacaccatttatctaacaatgacaaattaaattccc |
5698892 |
T |
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| Q |
217 |
gaattttatgaactcccagtcctttg |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5698891 |
gaattttatgaactcccagtcctttg |
5698866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 45014 - 44958
Alignment:
| Q |
173 |
catcctctaacaccatttatctaacaatgacaaattaaattcacgaattttatgaac |
229 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||| | |||| ||||||| |
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| T |
45014 |
catcctctaacaccacttacctaacaatgttaaattaaattctcaaattctatgaac |
44958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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