View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1493_high_28 (Length: 250)

Name: NF1493_high_28
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1493_high_28
NF1493_high_28
[»] chr2 (3 HSPs)
chr2 (1-243)||(2803224-2803466)
chr2 (1-65)||(33561509-33561573)
chr2 (5-90)||(13766795-13766882)
[»] chr4 (1 HSPs)
chr4 (12-90)||(42480533-42480611)
[»] chr6 (3 HSPs)
chr6 (1-65)||(8481962-8482026)
chr6 (4-65)||(5034882-5034943)
chr6 (24-65)||(27226675-27226716)
[»] chr5 (1 HSPs)
chr5 (12-95)||(10351242-10351325)
[»] chr3 (2 HSPs)
chr3 (24-65)||(260805-260846)
chr3 (13-90)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2803224 - 2803466
Alignment:
Q  1 tacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctacaattgt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2803224 tacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagacttttaacctacaattgt 2803323  T
Q  101 tgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtccaatatgaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803324 tgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtccaatatgaata 2803423  T
Q  201 tcaacactattgtaagtaaccgagtgggggtggtcctttgctt 243  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  2803424 tcaacactatagtaagtaaccgagtgggggtggtcctttgctt 2803466  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33561509 - 33561573
Alignment:
Q  1 tacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 65  Q
    |||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561509 tacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 13766882 - 13766795
Alignment:
Q  5 caaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 90  Q
    |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| |||||| ||||    
T  13766882 caaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagacttctaac 13766795  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  12 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 90  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8482026 - 8481962
Alignment:
Q  1 tacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 65  Q
    |||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482026 tacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 5034882 - 5034943
Alignment:
Q  4 ccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 65  Q
    ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034882 ccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  24 gtttatgggtcatctcttttatagaatgttcaacctccactt 65  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 10351242 - 10351325
Alignment:
Q  12 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctaca 95  Q
    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||||||||| |||| ||||    
T  10351242 ttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgtgagacttctaacttaca 10351325  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  24 gtttatgggtcatctcttttatagaatgttcaacctccactt 65  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  13 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 90  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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