View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1493_high_37 (Length: 222)
Name: NF1493_high_37
Description: NF1493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1493_high_37 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 955665 - 955886
Alignment:
| Q |
1 |
ccccgtcattagacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
955665 |
ccccgtcattagacgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggt |
955764 |
T |
|
| Q |
101 |
taaggtaacagaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtggaagtgagagagttaccatgcaaacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
955765 |
taaggtaacagaaacacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtgcaagtgagagagttaccatgcaaacat |
955864 |
T |
|
| Q |
201 |
ttctaccattctgactgcattc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
955865 |
ttctaccattctgactgcattc |
955886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University